import argparse import difflib import logging import os import sys sys.path.insert(1, os.path.abspath(os.path.join(os.path.dirname(__file__), os.pardir, 'lib'))) import galaxy import galaxy.app import galaxy.config from galaxy.objectstore import build_object_store_from_config from galaxy.security.idencoding import IdEncodingHelper from galaxy.util import unicodify from galaxy.util.bunch import Bunch from galaxy.util.script import app_properties_from_args, populate_config_args from galaxy.webapps.galaxy.controllers.page import _PageContentProcessor, _placeholderRenderForSave def main(argv): parser = argparse.ArgumentParser(formatter_class=argparse.ArgumentDefaultsHelpFormatter) parser.add_argument('-k', '--secret-key', help='Key to convert pages with', default='') parser.add_argument('-d', '--dry-run', help='No changes, just test it.', action='store_true') populate_config_args(parser) args = parser.parse_args() properties = app_properties_from_args(args) config = galaxy.config.Configuration(**properties) secret = args.secret_key or config.id_secret security_helper = IdEncodingHelper(id_secret=secret) object_store = build_object_store_from_config(config) if not config.database_connection: print("The database connection is empty. If you are using the default value, please uncomment that in your galaxy.yml") model = galaxy.config.init_models_from_config(config, object_store=object_store) session = model.context.current pagerevs = session.query(model.PageRevision).all() mock_trans = Bunch(app=Bunch(security=security_helper), model=model, user_is_admin=lambda: True, sa_session=session) for p in pagerevs: try: processor = _PageContentProcessor(mock_trans, _placeholderRenderForSave) processor.feed(p.content) newcontent = unicodify(processor.output(), 'utf-8') if p.content != newcontent: if not args.dry_run: p.content = unicodify(processor.output(), 'utf-8') session.add(p) session.flush() else: print("Modifying revision %s." % p.id) print(difflib.unified_diff(p.content, newcontent)) except Exception: logging.exception("Error parsing page, rolling changes back and skipping revision %s. Please report this error." % p.id) session.rollback() if __name__ == '__main__': main(sys.argv)