# Location of virtualenv used for development. VENV?=.venv # Source virtualenv to execute command (flake8, sphinx, twine, etc...) IN_VENV=if [ -f "$(VENV)/bin/activate" ]; then . "$(VENV)/bin/activate"; fi; RELEASE_CURR:=21.09 RELEASE_UPSTREAM:=upstream CONFIG_MANAGE=$(IN_VENV) python lib/galaxy/config/config_manage.py PROJECT_URL?=https://github.com/galaxyproject/galaxy DOCS_DIR=doc DOC_SOURCE_DIR=$(DOCS_DIR)/source SLIDESHOW_DIR=$(DOC_SOURCE_DIR)/slideshow OPEN_RESOURCE=bash -c 'open $$0 || xdg-open $$0' SLIDESHOW_TO_PDF?=bash -c 'docker run --rm -v `pwd`:/cwd astefanutti/decktape /cwd/$$0 /cwd/`dirname $$0`/`basename -s .html $$0`.pdf' YARN := $(shell command -v yarn 2> /dev/null) all: help @echo "This makefile is used for building Galaxy's JS client, documentation, and drive the release process. A sensible all target is not implemented." docs: ## Generate HTML documentation. # Run following commands to setup the Python portion of the requirements: # $ ./scripts/common_startup.sh # $ . .venv/bin/activate # $ pip install -r lib/galaxy/dependencies/dev-requirements.txt $(IN_VENV) $(MAKE) -C doc clean $(IN_VENV) $(MAKE) -C doc html docs-develop: ## Fast doc generation and more warnings (for development) $(IN_VENV) GALAXY_DOCS_SKIP_VIEW_CODE=1 SPHINXOPTS='-j 4' $(MAKE) -C doc html setup-venv: if [ ! -f $(VENV)/bin/activate ]; then bash scripts/common_startup.sh --dev-wheels; fi list-dependency-updates: setup-venv $(IN_VENV) pip list --outdated --format=columns docs-slides-ready: test -f plantuml.jar || wget http://jaist.dl.sourceforge.net/project/plantuml/plantuml.jar java -jar plantuml.jar -c $(DOC_SOURCE_DIR)/slideshow/architecture/images/plantuml_options.txt -tsvg $(SLIDESHOW_DIR)/architecture/images/ *.plantuml.txt $(IN_VENV) python scripts/slideshow/build_slideshow.py 'Galaxy Architecture' $(SLIDESHOW_DIR)/architecture/galaxy_architecture.md docs-slides-export: docs-slides-ready $(SLIDESHOW_TO_PDF) $(SLIDESHOW_DIR)/galaxy_architecture/galaxy_architecture.html _open-docs: $(OPEN_RESOURCE) $(DOCS_DIR)/_build/html/index.html open-docs: docs _open-docs ## generate Sphinx HTML documentation and open in browser open-project: ## open project on github $(OPEN_RESOURCE) $(PROJECT_URL) uwsgi-rebuild-validation: ## rebuild uwsgi_config.yml kwalify schema against latest uwsgi master. $(CONFIG_MANAGE) build_uwsgi_yaml tool-shed-config-validate: ## validate tool shed YAML configuration file $(CONFIG_MANAGE) validate tool_shed tool-shed-config-lint: ## lint tool shed YAML configuration file $(CONFIG_MANAGE) lint tool_shed tool-shed-config-convert-dry-run: ## convert old style tool shed ini to yaml (dry run) $(CONFIG_MANAGE) convert tool_shed --dry-run tool-shed-config-convert: ## convert old style tool shed ini to yaml $(CONFIG_MANAGE) convert tool_shed reports-config-validate: ## validate reports YAML configuration file $(CONFIG_MANAGE) validate reports reports-config-convert-dry-run: ## convert old style reports ini to yaml (dry run) $(CONFIG_MANAGE) convert reports --dry-run reports-config-convert: ## convert old style reports ini to yaml $(CONFIG_MANAGE) convert reports reports-config-lint: ## lint reports YAML configuration file $(CONFIG_MANAGE) lint reports config-validate: ## validate galaxy YAML configuration file $(CONFIG_MANAGE) validate galaxy config-convert-dry-run: ## convert old style galaxy ini to yaml (dry run) $(CONFIG_MANAGE) convert galaxy --dry-run config-convert: ## convert old style galaxy ini to yaml $(CONFIG_MANAGE) convert galaxy config-rebuild: ## Rebuild all sample YAML and RST files from config schema $(CONFIG_MANAGE) build_sample_yaml galaxy --add-comments $(CONFIG_MANAGE) build_rst galaxy > doc/source/admin/galaxy_options.rst $(CONFIG_MANAGE) build_sample_yaml reports --add-comments $(CONFIG_MANAGE) build_rst reports > doc/source/admin/reports_options.rst $(CONFIG_MANAGE) build_sample_yaml tool_shed --add-comments config-lint: ## lint galaxy YAML configuration file $(CONFIG_MANAGE) lint galaxy release-ensure-upstream: ## Ensure upstream branch for release commands setup ifeq (shell git remote -v | grep $(RELEASE_UPSTREAM), ) git remote add $(RELEASE_UPSTREAM) git@github.com:galaxyproject/galaxy.git else @echo "Remote $(RELEASE_UPSTREAM) already exists." endif release-merge-stable-to-next: release-ensure-upstream ## Merge last release into dev git fetch $(RELEASE_UPSTREAM) && git checkout dev && git merge --ff-only $(RELEASE_UPSTREAM)/dev && git merge $(RELEASE_UPSTREAM)/$(RELEASE_PREVIOUS) release-push-dev: release-ensure-upstream # Push local dev branch upstream git push $(RELEASE_UPSTREAM) dev release-issue: ## Create release issue on github $(IN_VENV) python scripts/bootstrap_history.py --create-release-issue $(RELEASE_CURR) release-check-metadata: ## check github PR metadata for target release $(IN_VENV) python scripts/bootstrap_history.py --check-release $(RELEASE_CURR) release-check-blocking-issues: ## Check github for release blocking issues $(IN_VENV) python scripts/bootstrap_history.py --check-blocking-issues $(RELEASE_CURR) release-check-blocking-prs: ## Check github for release blocking PRs $(IN_VENV) python scripts/bootstrap_history.py --check-blocking-prs $(RELEASE_CURR) release-bootstrap-history: ## bootstrap history for a new release $(IN_VENV) python scripts/bootstrap_history.py --release $(RELEASE_CURR) update-lint-requirements: ./lib/galaxy/dependencies/update_lint_requirements.sh update-dependencies: update-lint-requirements ## update pinned and dev dependencies $(IN_VENV) ./lib/galaxy/dependencies/update.sh node-deps: ## Install NodeJS dependencies. ifndef YARN @echo "Could not find yarn, which is required to build the Galaxy client.\nTo install yarn, please visit \033[0;34mhttps://yarnpkg.com/en/docs/install\033[0m for instructions, and package information for all platforms.\n" false; else cd client && yarn install --network-timeout 300000 --check-files endif client: node-deps ## Rebuild client-side artifacts for local development. cd client && yarn run build client-production: node-deps ## Rebuild client-side artifacts for a production deployment without sourcemaps. cd client && yarn run build-production client-production-maps: node-deps ## Rebuild client-side artifacts for a production deployment with sourcemaps. cd client && yarn run build-production-maps client-format: node-deps ## Reformat client code cd client && yarn run prettier client-watch: node-deps ## A useful target for parallel development building. See also client-dev-server. cd client && yarn run watch client-dev-server: node-deps ## Starts a webpack dev server for client development (HMR enabled) cd client && yarn run webpack-dev-server client-test: node-deps ## Run JS unit tests cd client && yarn run test client-eslint: node-deps # Run client linting cd client && yarn run eslint client-format-check: node-deps # Run client formatting check cd client && yarn run prettier-check client-lint: client-eslint client-format-check ## ES lint and check format of client client-test-watch: client ## Watch and run all client unit tests on changes cd client && yarn run jest-watch serve-selenium-notebooks: ## Serve testing notebooks for Jupyter cd lib && export PYTHONPATH=`pwd`; jupyter notebook --notebook-dir=galaxy_test/selenium/jupyter # Release Targets release-create-rc: ## Create a release-candidate branch or new release-candidate version $(IN_VENV) ./scripts/release.sh -c release-create: ## Create a release branch $(IN_VENV) ./scripts/release.sh release-create-point: release-create ## Create a point release .PHONY: help help: @egrep '^[a-zA-Z_-]+:.*?## .*$$' $(MAKEFILE_LIST) | sort | awk 'BEGIN {FS = ":.*?## "}; {printf "\033[36m%-30s\033[0m %s\n", $$1, $$2}'