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v15.07.1
Commit Graph
2493 Commits
Author SHA1 Message Date
Dannon Baker ed992b3b28 A large assortment of escaping fixes to primarily grids and javascript 
templating, and one bad-data-ingress fix (copy history name).
 2015-11-19 21:03:30 -05:00
Daniel Blankenberg e52b9ac255 Show tool parameter errors on initial tool form load. Needed for e.g. proper rerun display behavoir. 2015-09-25 16:42:31 -04:00
Dannon Baker 81ad14a4e7 Backport keyup to change input 2015-09-23 11:04:20 -04:00
guerler 4dd6304f05 Fix version parsing in tool form 2015-08-31 12:34:26 -04:00
guerler d2e61e8af4 Filter deleted library datasets 2015-08-27 11:52:45 +01:00
Jeremy Goecks 19c85e0705 Fixes to make Sweepster work again: (a) update template syntax to match changes made in underscore v1.7 and (b) update tool rerun to account for API changes. 2015-08-27 11:47:57 +01:00
Dannon Baker 79dbff1967 Merge pull request #602 from guerler/fix_collections_000 
[15.07] Fix output collection terminal base class
 2015-08-13 16:49:30 -04:00
guerler c938e66e98 Fix output collection terminal base class 2015-08-13 15:34:19 -04:00
Nate Coraor d9426dab92 Merge branch 'security-20150812-ldap' into release_15.07 2015-08-12 17:00:28 -04:00
Eric Enns 864e2b5111 Fix batch mode for collection, when collection maps to multiple inputs 2015-08-06 14:29:51 -05:00
Dannon Baker 488d42deb5 Merge branch 'release_15.05' into release_15.07 2015-07-22 12:37:26 -04:00
Carl Eberhard 6e8bfc62cc UI, Collections: use Galaxy.options.root for API URL 2015-07-15 10:13:22 -04:00
carlfeberhard 4792825924 Merge pull request #446 from jgoecks/trackster-close-files 
Trackster fixes: (a) close data provider files after reading from the…
 2015-07-13 11:36:02 -04:00
Martin Cech e9aa6e843d Merge pull request #426 from ericenns/feature/library_folder_export_to_history 
Feature/library folder export to history
 2015-07-13 16:29:01 +02:00
Jeremy Goecks 75ab206ca5 Trackster fixes: (a) close data provider files after reading from them (but there are some data providers that currently lack close functions so those files will remain open); (b) fix running tools by correcting HDA manager function call; (c) remove use of underscore template because uglify does not handle it well. 2015-07-09 12:47:15 +02:00
Eric Enns 8787f94cbb Replace lf_ids with folder_ids 2015-07-05 07:31:28 -05:00
Carl Eberhard b18cfa09b0 UI, collections: fix DatasetCollectionElement and DatasetAssociation id collision in DCECollection by preserving Element id in idAttribute 'element_id' 2015-07-05 13:13:13 +01:00
Eric Enns 34d60749a0 Fixed download in beta library view to work with folders 2015-07-05 05:51:06 -05:00
Eric Enns 33abc49473 Fixed bug where panel wouldn't show unless a folder was present 2015-07-05 04:48:14 -05:00
Eric Enns 5a3b6564bc Icon now changes properly when folder row selected in beta library interface 2015-07-05 04:27:08 -05:00
Eric Enns 61a909978b Updated library view to show toolbar when folder or file present instead of only when file present 2015-07-05 04:05:25 -05:00
Eric Enns 5deb35a106 Updated library folder row to toggle checkbox when row is clicked 2015-07-05 03:54:12 -05:00
Eric Enns 0c7c7db1e1 Added compiled js 2015-07-04 12:59:12 -05:00
guerler 61024b832e Add missing packed files 2015-06-24 15:42:46 -04:00
guerler e51cd719dc Fix remaining qunit test cases for the workflow editor 2015-06-24 13:56:02 -04:00
guerler 63fee8f7ce Undo merged fixed, replace underscore path rewrite 2015-06-24 12:33:17 -04:00
John Chilton 110b12e571 Modify a few references to underscore. 
This fixes these references when importing these modules through qunit.
 2015-06-17 22:26:26 -04:00
guerler cc979583ce Merge branch 'dev' of https://github.com/galaxyproject/galaxy into workflow_form_002 2015-06-17 16:04:37 -04:00
John Chilton fe625bc6cf Merge pull request #351 from guerler/add_argument_001 
Add parenthesis to argument name search
 2015-06-16 15:03:35 -04:00
John Chilton 042ec77100 Merge pull request #347 from martenson/ts-refactor-static 
refactor TS javascript files to be separated from Galaxy JS
 2015-06-16 14:23:33 -04:00
guerler 0c69c5b92f Add parenthesis to argument name search 2015-06-15 14:58:20 -04:00
guerler d2da9d9a17 Only add argument name if unavailable in help text 2015-06-15 13:46:01 -04:00
Martin Cech e8087f7b12 refactor TS javascript files to be separated from Galaxy JS 
thanks to Carl for helping me with this
 2015-06-15 13:31:16 -04:00
guerler ca832ced32 Add tool parameter argument to parameter help 2015-06-15 13:25:39 -04:00
guerler 97212e9b32 Remove globals from workflow-node module 2015-06-15 12:27:29 -04:00
guerler 0b96cbd0e9 Remove unnecessary files 2015-06-15 12:22:38 -04:00
guerler 6bf4a45e25 Remove unnecessary export of OutputCalloutView 2015-06-15 04:27:56 -04:00
guerler 614b35e3a9 Merge branch 'dev' of https://github.com/galaxyproject/galaxy into workflow_form_002 
Conflicts:
	client/galaxy/scripts/galaxy.workflows.js
	static/maps/galaxy.workflows.js.map
	static/scripts/galaxy.workflows.js
 2015-06-15 04:01:26 -04:00
guerler fd9f027a5c Further workflow front-end refactoring 2015-06-15 03:50:49 -04:00
John Chilton 07072bd568 Merge pull request #326 from martenson/ts-groups 
TS groups
 2015-06-13 17:26:32 -04:00
guerler 66fa7c2ad2 Fix generic forms for modules 2015-06-10 03:13:38 -04:00
Martin Cech cfe9620192 backbone base of TS groups 
fix backbone hash problem; some more formatting and API polishing

refactor group API controller; better format group detail view

more formating and refactoring

add column to group detail

update details, add some more info to API response
 2015-06-09 16:13:10 -04:00
guerler 4bceafcbf4 Merge branch 'dev' of https://github.com/galaxyproject/galaxy into workflow_form_002 
Conflicts:
	client/galaxy/scripts/galaxy.workflow_editor.canvas.js
	static/maps/galaxy.workflow_editor.canvas.js.map
	static/scripts/galaxy.workflow_editor.canvas.js
 2015-06-08 14:43:04 -04:00
guerler c18616d14a Import js changes from https://github.com/galaxyproject/galaxy/pull/311/files 2015-06-08 14:37:41 -04:00
John Chilton 732abcc0db Merge remote-tracking branch 'jmchilton/release_15.05' into dev 2015-06-08 14:04:28 -04:00
guerler d22f1fb96d Replace global js variables by shared object module 2015-06-06 17:06:59 -04:00
guerler 2815354989 Follow jquery blog suggestions on attr vs prop usage 2015-06-05 15:45:11 -04:00
guerler 38037e487d Always open tool help links in a new window tab 2015-06-05 15:15:29 -04:00
John Chilton 620accaaad Extend workflow editor to allow output collections in tools. 
Mostly test cases - because I guess I could have sworn it was going to be harder than this.
 2015-06-04 14:38:38 -04:00
guerler 62de13d075 Replace global by local functions and remove unused function 2015-06-04 12:32:58 -04:00