Nicola Soranzo
c82749688e
Merge branch 'release_19.05' into dev
2019-05-11 14:05:55 +01:00
Dannon Baker
349ac80412
Include suggestion from Marius to make port specification more clear.
2019-05-10 10:12:27 -04:00
Dannon Baker
a1487d733a
Fix a few more random typos in config, rebuild
2019-05-10 10:09:10 -04:00
Dannon Baker
6bc802307f
Document the modern docker networking special DNS 'host.docker.internal' for use with GIES. Fix another typo I saw.
2019-05-10 10:04:12 -04:00
Nicola Soranzo
8a2abb867f
Update instructions on conda upgrade
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Reported by @William-Brown .
2019-05-08 18:54:55 +01:00
Dannon Baker
a9b1a0454d
Update documentation for IES
2019-05-08 11:59:16 -04:00
Dannon Baker
fd75ce5e43
Standardize (at least a step forward) access to IES lib via bundle
2019-05-08 10:59:34 -04:00
Dannon Baker
dfa13efe63
Update doc on NodeJS version compatibility (I updated proxy deps a while back, works with modern node now)
2019-05-08 10:25:26 -04:00
Dannon Baker
38c2a80904
Update IES to use bundleEntries-based JS entrypoint to avoid having to ship an extra file; incremental step towards removing require here, too.
2019-05-07 16:44:15 -04:00
John Chilton
f81c41895b
Allow YAML configuration of job_conf.xml.
2019-05-07 08:23:30 -04:00
Sergey Golitsynskiy
158fb6b454
Update config_schema + run make config-rebuild
2019-04-27 01:19:57 -04:00
Dannon
e95abd4cbf
Merge pull request #7707 from martenson/plusone-enough
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[PROCEDURES] relax the vote requirement for fixing bugs in releases
2019-04-17 17:15:51 -04:00
John Chilton
12b41507a2
Merge pull request #7706 from martenson/procedure-docs
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[PROCEDURES] exempt notes, changelogs, and packages from mandatory review
2019-04-17 16:11:23 -04:00
Nate Coraor
d1d5944387
Mention cookie_path in the nginx/Apache docs just for anyone who had it
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set and might be confused about why it's no longer documented.
2019-04-16 17:48:36 -04:00
Nate Coraor
fed86eb598
Remove cookie_path configuration documentation since it's now set
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automatically.
2019-04-16 17:48:36 -04:00
Nicola Soranzo
305ca77cc2
Replace `enable_beta_export_format2_default with default_workflow_export_format`
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This allows future different formats to be included.
Also remove promises about next release.
2019-04-15 20:11:26 +01:00
Martin Cech
7de1255670
relax the vote requirement for fixing bugs
2019-04-09 13:52:43 -04:00
Martin Cech
b40ef5ba4c
[PROCEDURES] exempt release notes, changelogs, and packages from mandatory review
2019-04-09 13:49:04 -04:00
Martin Cech
1075a0e6bc
Merge pull request #7659 from jmchilton/format2_import_default
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Allow import of format2 workflows by default for 19.05.
2019-04-09 10:50:45 -04:00
guerler
6ee429cdda
Remove unused openid config file option
2019-04-06 03:18:25 -04:00
guerler
1308b5f4dc
Repack config yaml
2019-04-06 01:50:30 -04:00
guerler
28f34c433e
Add OpenID support
2019-04-06 01:20:36 -04:00
John Chilton
4b13917d86
Allow import format2 workflows by default.
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Setup forcing export of format2 workflows by default in next release. There should be a least one release between enabling them to be imported by default and exporting them by default anyway I think - so 19.09 workflows can still be used on slightly older Galaxy instances.
2019-04-04 09:15:30 -04:00
Dannon Baker
2bb159ef52
Merge remote-tracking branch 'upstream/release_19.01' into dev
2019-03-22 10:49:37 -04:00
Nicola Soranzo
a322065e11
Merge pull request #7555 from jmchilton/refactor_xsd_outputs
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Refactor XSD output elements to share common output attributes.
2019-03-19 19:13:12 +00:00
Dannon
a6e173606d
Merge pull request #7558 from erasche/fix-handler-docs
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Improve linking between job conf handler assignment and documentation
2019-03-19 08:10:14 -04:00
Helena Rasche
38e888b87a
Improve linking
2019-03-19 09:56:08 +01:00
John Chilton
41f6584e6f
Refactor XSD output elements to share output attributes.
2019-03-18 15:06:48 -04:00
Helena Rasche
df7904dd7b
Add user facing release notes
2019-03-14 10:02:15 +01:00
Ott Oopkaup
b247477a26
Update scaling.md
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Virtualenv and path envvars are neccesary, breaks toolshed installs
2019-03-13 13:09:12 +02:00
Helena Rasche and ooobik
50e1cea907
Update doc/source/admin/scaling.md
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Co-Authored-By: ooobik <ott.oopkaup@ut.ee >
2019-03-13 13:06:19 +02:00
Helena Rasche and ooobik
a34f32c913
Update doc/source/admin/scaling.md
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Co-Authored-By: ooobik <ott.oopkaup@ut.ee >
2019-03-13 13:06:09 +02:00
Helena Rasche and ooobik
d8010cc3dc
Update doc/source/admin/scaling.md
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Co-Authored-By: ooobik <ott.oopkaup@ut.ee >
2019-03-13 13:06:00 +02:00
alkhatraz
86f6f94e0f
Updated systemd docs in admin/scaling
2019-03-12 18:24:45 +02:00
alkhatraz
651de51b95
Updated systemd docs in admin/scaling
2019-03-12 18:20:36 +02:00
Martin Cech
75ae68693f
remove biostar integrations
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we stopped using it and this will lower our maintenance burden
2019-03-11 15:51:41 -04:00
Peter Selten
844839f028
Update CLIJobRunner to ShellJobRunner according to #7433
2019-03-07 23:33:00 +00:00
Peter Selten
64b461eac8
Update Platform LSF to Spectrum LSF
2019-03-07 23:26:46 +00:00
pvanheus
ae3b0cfb55
Note cannot import name _remove_dead_weakref error and solution
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Having a different Python version on the Galaxy server vs the compute nodes can cause an error including the message `ImportError: cannot import name _remove_dead_weakref`. This adds text to describe the error and its resolution
2019-03-04 22:00:46 +02:00
Dannon
b76d5053fa
Merge pull request #7453 from abretaud/patch-3
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Fix doc for statsd conf for uwsgi?
2019-03-04 13:12:21 -05:00
Anthony Bretaudeau
0156e61a58
remove reference to paster
2019-03-04 16:46:56 +01:00
Anthony Bretaudeau
ba2e0240fe
add details on gxadmin
2019-03-04 15:34:16 +01:00
Anthony Bretaudeau
3a220d02b9
typo
2019-03-04 15:26:11 +01:00
Nicola Soranzo
cb8c601683
Merge pull request #7428 from erasche/user-prefs-location
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Allow configuration location of user preferences extra configuration
2019-03-04 14:16:12 +00:00
Anthony Bretaudeau
d08ce52cce
Fix doc for statsd conf for uwsgi
2019-03-04 12:20:03 +01:00
Helena Rasche
c533aa49f8
Correct help per @nsoranzo request
2019-03-04 12:02:24 +01:00
Nicola Soranzo
7017d92d10
Merge branch 'release_19.01' into dev
2019-03-03 15:53:51 +00:00
Nicola Soranzo
91e49acf37
Merge branch 'release_18.09' into release_19.01
2019-03-03 15:52:13 +00:00
mvdbeek
bc8cf37d09
Remove broken tool_submission_burst
2019-03-02 16:53:36 +01:00
Helena Rasche
90c29fcaee
Allow configuring user preferences location
2019-02-28 14:34:32 +01:00
Nicola Soranzo