This resolves the issue with multiple HideDatasetActions being created.
Existing workflows displaying multiple HideDatasetActions per step on the Run Workflow screen will persist.
These extra HideDatasetActions are harmless, but a simple edit workflow -> save will remove them.
- Add excanvas support for IE <9 to trackster, but performance is bad
- Refactor unused/duplicate init code for trackster
- Fix IE workflow bug with Input Datasets
- Fix IE search button displaying twice
- Don't re-add new datasets when refreshing after using "Add into current viz" link
- To prevent browser lockup, only display up to 50 lines of features by default (user-editable in future). TODO: add warning message when this occurs
Individual changes include: (a) improvements to datatypes and data providers to support BED score filtering and VCF quality filtering; (b) addition of jQueryUI theme for slider; (c) modifications to trackster to show, update, and apply filters.
- New histogram mode for LineTrack that's used by default.
- Refactored LineTrack drawing code
- Can change draw color of LineTrack
- summary_tree now shows maximum y-axis value
- When editing track config, "Enter" and "Esc" keys submit and cancel the changes, respectively
- Fix LineTrack axis labels not aligning consistently
- New image for draggable elements
- New slider that is rounded, easier to see and will go off-screen if smaller than the minimum width
- Added "Close overview" link when overview is showing
- Fix array_tree from recent refactoring
- now the tool requires the user to enter the specific columns indicating ref base, position, and start of a sample
- added an interactive zoom option. when this option is selected, the image can be zoomed in or out using the mouse wheel.
- fixed the firefox & opera problems in displaying the svg image
- Better packing for trackster when zoomed in as packing will be done on a w_scale basis instead of rounding to levels
- Move folder icon in data libraries to next to the text, rephrase suggestion on compression schemes
Output flagging now has a third faded icon, and tooltip, and aligns properly on multiline outputs.
ToolForm width now properly calculated, taking into account the length of input and output rows.
-Max width is 250px, min is 150px.
Output extensions are now properly separated by ', ' (including space) instead of just slammed together.
Fixed a bug where a newly created node had no outputs array.
- Each track now has an Overview checkbox that will set the initial chromosome-wide view of that track to become the overview
- Visualizations that users own or are shared with can now be cloned
- Go-to feature lets users go directly to a certain chrom (eg "chr1"), or chrom and position ("chr1:1-100,000,000")
- Fix double flushing when creating converter
- Line tracks display mode is now inline
- Use smaller font for tracks
- Fix web-kit bug where using scrollbar would also trigger viewport dragging
- Fix Line tracks jumping around when changing position
- Made default Line track height 80px from 100px
- Fix drag-zoom overlay appearing at top of header instead of Label track
- Minor grid refactoring
- Dbkey now shown in "Saved Visualizations" grid
- "Visualize in Trackster" icon in history pane for supported dataset now works, letting you add that dataset to an existing browser or to a new browser. Dbkey for existing browsers is also shown.
- Fix Reference track incorrect display offset
- When no tracks exist in editor, show suggestion to add tracks
- Clicking "Visualize in Trackster" in history now shows a grid of current browsers, but actual adding is still work in progress
- Fix vertical scrolling with mouse quirkiness
- Intro screen asking to select a chrom when no chrom is selected
- Fix Reference tracks not hiding when there is no longer sequence to display
- Make embedded vis not overflow
- Fix drag-selecting region not working in embedded viz
make_style.py can now be run without parameters, which will default to the blue theme
Dannon Baker