Ref:
https://docs.sqlalchemy.org/en/14/changelog/migration_20.html#library-level-but-not-driver-level-autocommit-removed-from-both-core-and-ormohttps://docs.sqlalchemy.org/en/14/changelog/migration_20.html#implicit-and-connectionless-execution-bound-metadata-removed
Exposed by the following tests:
test/unit/data/model/test_model_discovery.py::test_model_create_context_persist_hdas
test/unit/data/model/test_model_discovery.py::test_model_create_context_persist_error_hda
test/unit/data/model/test_model_discovery.py::test_persist_target_library_dataset
test/unit/data/model/test_model_discovery.py::test_persist_target_library_folder
test/unit/data/model/test_model_discovery.py::test_persist_target_hdca
/home/sergey/0dev/galaxy/_galaxy/dev/lib/galaxy/model/triggers/utils.py:8: RemovedIn20Warning: The DDLElement.execute() method is considered legacy as of the 1.x series of SQLAlchemy and will be removed in 2.0. All statement execution in SQLAlchemy 2.0 is performed by the Connection.execute() method of Connection, or in the ORM by the Session.execute() method of Session. (Background on SQLAlchemy 2.0 at: https://sqlalche.me/e/b8d9)
cmd.execute(bind=engine)
test/unit/data/model/test_model_discovery.py::test_model_create_context_persist_hdas
test/unit/data/model/test_model_discovery.py::test_model_create_context_persist_error_hda
test/unit/data/model/test_model_discovery.py::test_persist_target_library_dataset
test/unit/data/model/test_model_discovery.py::test_persist_target_library_folder
test/unit/data/model/test_model_discovery.py::test_persist_target_hdca
/home/sergey/0dev/galaxy/_galaxy/dev/lib/galaxy/model/triggers/utils.py:8: RemovedIn20Warning: The Engine.execute() method is considered legacy as of the 1.x series of SQLAlchemy and will be removed in 2.0. All statement execution in SQLAlchemy 2.0 is performed by the Connection.execute() method of Connection, or in the ORM by the Session.execute() method of Session. (Background on SQLAlchemy 2.0 at: https://sqlalche.me/e/b8d9)
cmd.execute(bind=engine)
The `conda` package on PyPI is severely outdated and unmaintained, and
the output of `run_command("search", ...)` did not parse correctly.
Fix broken `test_conda_search` unit test.
We do need to include some kind of worker id in the server_name. If we
don't do this and we start with multiple workers the internal
QueueWorker won't work and multiple processes can pick up the same job
if the web process is also a job handler.
Reused for a bunch of things in the deferred data branch but it does simplify the tasks file for now and move more logic into managers - which I think is a better place.
Sergey Golitsynskiy