 Jeremy Goecks
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f3066fc658
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Backbone-ify server-state deferred and use when running tools in Trackster.
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2012-06-08 15:36:02 -04:00 |
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Jeremy Goecks
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5deadd39cd
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Draw tiles based on region rather than tile index because it provides more flexibility.
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2012-06-07 17:43:22 -04:00 |
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Jeremy Goecks
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f8f06c3706
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Visualization infrastructure: (a) Backbone-ify cache and data managers; (b) push parameter value sampling code into Tool objects. Pack scripts.
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2012-06-07 16:47:06 -04:00 |
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Jeremy Goecks
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cc9381d436
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Foundation for parameter sweeping visualization.
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2012-06-05 17:10:23 -04:00 |
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Jeremy Goecks
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5ba3cb6553
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Place all JavaScript visualization code under static/scripts/viz directory.
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2012-06-04 12:26:52 -04:00 |
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Jeremy Goecks
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52d4e3f40d
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Fix compatibility issue with 9765176c63f7
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2012-05-30 18:09:26 -04:00 |
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Jeremy Goecks
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bc798cef1e
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Use backbone to save trackster visualizations.
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2012-05-30 16:37:51 -04:00 |
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Jeremy Goecks
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988313826f
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Fix bug in showing/hiding filters in Trackster.
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2012-05-30 09:39:59 -04:00 |
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Jeremy Goecks
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6572730fdd
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Visualization: (a) rename circos viz 'circster' and (b) foundational work for circster and backbone-visualization integration. Also pack scripts.
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2012-05-28 12:10:04 -04:00 |
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Jeremy Goecks
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c3e6472d1b
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Move icons from trackster.css to base.css for general usage.
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2012-05-28 12:05:20 -04:00 |
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Jeremy Goecks
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97650ce691
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Partial implementation of Circos visualization using D3.
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2012-05-25 15:13:25 -04:00 |
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Jeremy Goecks
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54edaf8eaa
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Trackster: explicitly set tile height to avoid unneeded whitespace. Pack scripts.
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2012-05-22 12:37:51 -04:00 |
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Jeremy Goecks
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ba255221d3
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Trackster: better comments and help text.
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2012-05-21 12:42:53 -04:00 |
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Jeremy Goecks
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3371b095bc
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Update comments and coding conventions in Trackster code.
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2012-05-21 12:10:30 -04:00 |
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Jeremy Goecks
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5a0cf3c753
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Fix Trackster bug when fetching more tile data. Pack script.
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2012-05-16 17:27:53 -04:00 |
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Jeremy Goecks
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ee5a7d391b
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Fix bug in Trackster tile management. Pack script.
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2012-05-15 12:09:32 -04:00 |
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Jeremy Goecks
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aacf950854
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Fix bug so that reference track cannot be resized.
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2012-05-11 18:43:51 -04:00 |
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Jeremy Goecks
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9c9e728a5b
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Fix display bugs associated with c5da9bd8bbfc. Pack script.
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2012-05-08 17:26:14 -04:00 |
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Jeremy Goecks
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c976d4d280
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Add support for server-state based jQuery deferreds and use for resetting data URL when running tools in Trackster. Pack script.
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2012-04-24 12:17:01 -04:00 |
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Jeremy Goecks
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68aeff663c
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Fix style conflict between base.css and trackster.css
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2012-04-23 09:28:12 -04:00 |
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Dannon Baker
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c7dccc457b
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Pack scripts.
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2012-04-20 11:21:50 -04:00 |
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Dannon Baker
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3ee5a84743
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Fix heavy handed removal of PJAs when not using outputs.
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2012-04-20 11:16:14 -04:00 |
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Jeremy Goecks
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eff9f81957
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Trackster: better handling of resizing and navigation. Pack script.
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2012-04-19 16:33:29 -04:00 |
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Jeremy Goecks
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3373da10c6
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Trackster: do not subset data with no detail.
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2012-04-19 12:46:31 -04:00 |
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Jeremy Goecks
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47c101e4ce
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Trackster: correctly handle navigation when only chrom name is used and name is the same as chrom currently being viewed.
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2012-04-19 11:49:59 -04:00 |
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Jeremy Goecks
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9bcf3e2416
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Enable interval datasets to be visualized in trackster.
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2012-04-18 16:59:14 -04:00 |
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Jeremy Goecks
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940b2f19d6
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Trackster: use strand coloring for FeatureTracks.
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2012-04-18 10:07:15 -04:00 |
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Dannon Baker
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58e6931479
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Pack scripts.
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2012-04-17 15:04:52 -04:00 |
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Dannon Baker
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67c3d95934
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Workflow outputs logic rewrite. Accounts for old workflows that have no outputs defined but do use HideDatasetActions.
Fixes the bug where you couldnt' remove the last HideDatasetAction from a workflow in some situations.
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2012-04-17 15:03:38 -04:00 |
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Jeremy Goecks
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b052963357
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Trackster: (a) fix bug in setting up browser router and (b) use events to notify router that view navigation has occurred.
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2012-04-17 14:37:49 -04:00 |
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Jeremy Goecks
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c296e286d1
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Do not use template for tool panel label as it is overkill.
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2012-04-16 21:49:05 -04:00 |
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Dannon Baker
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fb36235aab
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Significantly improve handling of SAM rendering with the new tabular display. Optional parameters are accounted for now.
For all tabular display: numerical columns align right, text aligns left.
Build CSS.
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2012-04-16 21:08:41 -04:00 |
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Jeremy Goecks
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bd927abf41
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Use hash as location in Trackster.
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2012-04-16 10:18:25 -04:00 |
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Dannon Baker
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5dd1a53cab
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Quick fix for screencasts. TODO: Modal/overlay javascript needs to use the height/width parameters.
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2012-04-14 11:23:01 -04:00 |
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Jeremy Goecks
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273dae22a2
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Automated merge with https://bitbucket.org/galaxy/galaxy-central
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2012-04-12 15:44:12 -04:00 |
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Jeremy Goecks
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55a672937f
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Use javascript:void(0) rather than # in tool section links to avoid unwanted scrolling to top of page.
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2012-04-12 15:36:06 -04:00 |
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Jeremy Goecks
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03c9ed55d0
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Change name of directory with backbone code to mvc.
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2012-04-12 14:29:36 -04:00 |
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Jeremy Goecks
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c644dba9e8
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Change handlebars directory name to templates.
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2012-04-12 14:21:35 -04:00 |
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Jeremy Goecks
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d0861b9e0e
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Basic support for dynamically displaying tool forms.
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2012-04-12 14:18:44 -04:00 |
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Dannon Baker
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919911c0c7
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Incremental display for tabular datatypes.
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2012-04-11 11:52:52 -04:00 |
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Jeremy Goecks
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29de5a0a7a
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Add Backbone-relational library; this is used for managing complex object/collection relationships.
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2012-04-11 10:31:18 -04:00 |
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Jeremy Goecks
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5b2cda4a55
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Create object to store Galaxy paths for use in JavaScript.
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2012-04-10 19:06:24 -04:00 |
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Jeremy Goecks
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0a8c7565fe
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Backbone UI enhancements: create collection of tools in tool panel and use to get model when a tool link is clicked.
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2012-04-10 11:19:47 -04:00 |
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Jeremy Goecks
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e0a04212f7
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Small fixes for Trackster icons
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2012-04-10 09:28:07 -04:00 |
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Jeremy Goecks
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c0838a3c3b
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Fold tool panel styles back into base.css and include new style for tool panel in panel (w/o iframe).
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2012-04-09 15:20:15 -04:00 |
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Daniel Blankenberg
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59f8dd9a89
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Fix for not showing hidden tools in tool panel.
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2012-04-09 14:26:11 -04:00 |
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Jeremy Goecks
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812534f40c
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Simplify and generalize tool menu container style.
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2012-04-09 13:31:08 -04:00 |
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Jeremy Goecks
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53db7e49dd
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Use postdraw_actions rather than predraw_init to reset track parameters after executing tool and fetching data.
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2012-04-08 12:15:54 -04:00 |
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Jeremy Goecks
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f9ddf769ec
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Do not use individual views for buttons in icon button menus.
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2012-04-08 11:44:21 -04:00 |
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Jeremy Goecks
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05f1470d9e
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Fix bugs in data fetching for tracks created via tools.
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2012-04-06 11:46:56 -04:00 |
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