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15,206 Commits 63 Branches 243 Tags
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155 Commits
Author SHA1 Message Date
Dan Blanchard 6f53287193 Update DRMAA Python version in eggs.ini to 0.7.6. 
This version has better string handling and supports Python 3.
 2014-06-16 13:27:38 +00:00
Nate Coraor 4768c9de15 Drop threadframe for heartbeat (its functionality was integrated in sys in Python 2.5...) 2014-06-12 09:51:45 -04:00
Nate Coraor 5a460288df Upgrade kombu/amqp to fix ssl disconnect on consumer timeout bug: https://github.com/celery/py-amqp/pull/38 2014-06-05 10:07:39 -04:00
Dannon Baker fceadaf1f2 Kombu also requires ordereddict backport to support python2.6, more eggs. 2014-05-19 18:58:13 -04:00
Dannon Baker c05bef0908 Add conditional requirement of importlib for python 2.6/kombu. 2014-05-19 18:11:52 -04:00
Dannon Baker 87131537f9 Add simplejson back again until 'anyjson' changes are pushed through bioblend. 2014-04-24 11:03:23 -04:00
Dannon Baker fb10c696a8 Add mock, poster eggs. Both may go away depending on which way bioblend goes w/ deps, but it keeps things working for now. 2014-04-23 17:07:39 -04:00
Dannon Baker a329745571 Merge. 2014-04-21 17:10:48 -04:00
Dannon Baker e5052df2a4 Convert cloudlaunch over to bioblend egg/launching, unifying the two approaches. The bioblend codebase will be where improvements (vpc, etc) happen moving forward. 2014-04-21 17:10:23 -04:00
Nate Coraor f82e997a8f Update bx-python to 0.7.2 2014-04-15 13:32:31 -04:00
Nicola Soranzo f73d5fba6c Fix old wiki links. 2014-04-10 20:00:45 +02:00
John Chilton 9ca58431e3 Add dependency on requests 2.2.1. 
Will improve and fix bugs in API testing and API driven tests of tools.
 2014-03-20 10:43:24 -05:00
Dannon Baker 72f2a1b5bd Update boto to 2.27.0 -- thirequired update to support VPC support that worked incorrectly in previous versions. 2014-03-18 11:04:55 -04:00
Dannon Baker cc03a9b144 Add PyYAML 3.10 egg. 2014-02-20 13:10:00 -05:00
Nate Coraor 38f36eb88f Remove obsolete DRMAA_python egg from eggs.ini. 2014-02-20 10:51:42 -05:00
Dannon Baker c6d9b53ce5 Update boto to 2.25.0 in anticipation of supporting VPC 2014-02-19 19:33:27 -05:00
Dannon Baker 7474579310 Swap amqplib for amqp. This was mostly a drop-in replacement, since it's a currently-maintained fork of amqplib, with slight updates to work with amqp 0-9-1. 2014-02-19 14:27:10 -05:00
Dannon Baker 31a190424a Add kombu, amqp, anyjson eggs. 2014-02-18 11:47:23 -05:00
Dannon Baker a48f25f397 Update guppy egg to 0.1.10. This resolves issues encountered on particular platforms (http://sourceforge.net/p/guppy-pe/bugs/10/) 2014-01-31 09:29:24 -05:00
Dannon Baker 2ad0bfae20 Add pytz egg. 2014-01-31 09:26:07 -05:00
Dannon Baker f257a11448 Upgrade Babel egg from 0.9.4 to 1.3. This resolves several known issues with utf-8 for particular distributions. 2014-01-31 07:43:28 -05:00
Dannon Baker 2c7b758b32 Eliminate simplejson for real this time. Update WebHelpers to v 1.3 (no longer requires simplejson), fix deprecated methods. 2014-01-13 10:54:20 -05:00
Dannon Baker d85edddba1 Temporarily add simplejson back until webhelpers is updated 2014-01-10 14:22:03 -05:00
Dannon Baker 559ecb4ec8 Remove dependency on simplejson; convert everything over to using the json module in the python standard library. 2014-01-10 07:29:05 -05:00
Nate Coraor e36ec9b5e8 Upgrade psycopg2 to 2.5.1 (statically linked to PostgreSQL 9.2.4). 2013-09-23 18:45:58 -04:00
Nate Coraor 2dae23f29c Update drmaa to 0.6 2013-09-23 15:08:34 -04:00
Dave Bouvier 1011312308 Add paramiko egg, which fabric 1.7 depends on. 2013-09-23 11:43:06 -04:00
Dave Bouvier 2dc4bad29b Upgrade Fabric egg to 1.7.0. 2013-09-23 11:04:52 -04:00
Nate Coraor 126c02eb71 Experimental/alpha/in-development/incomplete object store plugin for iRODS. This plugin will probably set your iRODS instance on fire: do not use except in development/testing. 2013-08-28 16:20:19 -04:00
Nate Coraor 828c4953f5 Upgrade pbs_python to 4.3.5 2013-07-02 04:13:02 -04:00
Dannon Baker c2e71bc003 Postgres migrations successful, model updated 2013-04-18 15:35:00 -04:00
Dannon Baker 924d0a0896 Add Parsley egg prior to merging search API. 2013-04-09 13:20:29 -04:00
James Taylor d02155ad7b Require Python 2.6+ and remove various compatibility patches for 2.4 and 2.5 2013-04-09 11:57:38 -04:00
James Taylor ba20ad1c18 eggs: Update Paste and PasteDeploy 2013-02-04 23:30:32 -05:00
James Taylor 56a81d0134 Support for using Sentry for error logging. If sentry_dsn is set in 
universe_wsgi.ini, then:
 - A middleware will be installed that send thrown exceptions to sentry
 - All logging messages of level WARN and above will be sent to sentry
 - All pages extending base/base_panels will have javascript errors
   captured and sent to sentry
 2013-02-02 17:56:55 -05:00
James Taylor 15ec130bfb core: add PasteDeploy dependency back, used inside Paste#httpserver 2013-02-01 17:30:58 -05:00
James Taylor f6629fd8c4 changeset: 8701:c3ac9849dd1b 
branch:      unstable
tag:         tip
user:        James Taylor <james@jamestaylor.org>
summary:     core: pull the pieces of PasteScript we use into galaxy.util.pastescript. Remove all dependencies on PasteScript and PasteDeploy. Begin stripping down the serve command so we can start to enhance it for our needs.
 2013-01-30 15:26:00 -05:00
James Taylor b046082326 comment out two eggs from eggs.ini for now 2013-01-07 16:25:54 -05:00
James Taylor cb577e897d update msgpack_python version for trace logging, don't log entire stack with each query 2013-01-04 14:26:22 -05:00
James Taylor 78bccd493e merge 2013-01-03 16:54:14 -05:00
Nate Coraor 4421e1bbd1 Download eggs from Galaxy resources in EC2. 2012-10-26 12:56:23 -04:00
James Taylor cc95cf3eff tracing: first pass trace logging to fluentd 2012-10-02 11:03:48 -04:00
Dannon Baker 956215841a Boto bumped to 2.5.2, async cloudlaunch update with downloadable keys and basic cluster picker. 2012-09-12 12:51:56 -04:00
Dave Bouvier ef0fa0fa8f Upgrade mercurial egg to 2.2.3 2012-08-29 16:08:01 -04:00
Nate Coraor db3025b805 Add ssh egg and fix a requirement for the Tool Shed. 2012-05-24 10:05:55 -04:00
Nate Coraor 0dc1da38b1 Upgrade pycrypto egg, build Fabric egg. 2012-05-16 10:30:25 -04:00
Nate Coraor cbbfb1c78c Provide mercurial as an egg for tool shed operations. 2012-04-23 13:20:29 -04:00
Dannon Baker f0003f088a boto 2.2.2 - update eggs.ini 2012-02-24 13:58:01 -05:00
Nate Coraor d03b63a311 Merge galaxy-central 2011-11-15 12:35:57 -05:00
Nate Coraor 3e232e23e5 Add the boto egg for S3 Object Store. 2011-11-15 12:34:47 -05:00