 Carl Eberhard
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f1c09ee6cf
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merge; add temporary template to commit
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2012-08-31 12:12:28 -04:00 |
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Carl Eberhard
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ac67dc378e
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(WIP) history panel, backbone.js conversion (includes alternate_history.mako as a temporary transition template)
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2012-08-31 11:53:46 -04:00 |
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Tomithy Too
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516d727229
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re-integrated phyloviz to a new fork of galaxy-central with a tat of minor touch up; save and edit now works
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2012-08-26 18:22:23 +08:00 |
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Jeremy Goecks
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2b561bccfb
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Trackster: for feature tracks, only draw name if available.
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2012-08-23 13:56:34 -04:00 |
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Jeremy Goecks
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2a4012e03d
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Final JS reorg to rename and move files so that all files follow standard conventions.
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2012-08-21 17:08:35 -04:00 |
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Jeremy Goecks
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66d1892364
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More JS file reorganization: (a) move IE and rgenetics into their own directories; (b) move additional external libraries to libs.
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2012-08-21 16:54:19 -04:00 |
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Jeremy Goecks
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44d37d7eee
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Move most jQuery files into own libs directory.
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2012-08-21 15:52:50 -04:00 |
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Jeremy Goecks
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a3d8452df5
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JavaScript cleanup: (a) create backbone lib in scripts/lib and use for backbone libraries; (b) clean up history.js; (c) pack scripts.
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2012-08-21 14:27:18 -04:00 |
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Jeremy Goecks
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871f72c956
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Trackster: for explicit coverage histogram mode in Feature Tracks, use coverage indices rather than computing on client side.
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2012-08-19 15:42:11 -04:00 |
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Carl Eberhard
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b2a5996a6c
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tool-data change to fix bwa_wrapper.test_tool_000001; backbone history.js start
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2012-08-14 13:15:48 -04:00 |
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Jeremy Goecks
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bcc9a3b73d
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Update track icons when decomposing a composite track into individual tracks.
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2012-08-07 09:52:14 -04:00 |
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Jeremy Goecks
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29037352df
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Trackster and data providers: fix and document one-off/coordinate systems used for different track types.
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2012-08-03 11:20:43 -04:00 |
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Carl Eberhard
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6337e6565b
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fixes for tool search clear-btn (to use templating); added bootstrap.js to tool menu iframe
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2012-08-02 16:43:59 -04:00 |
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Carl Eberhard
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62b0725513
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btn/esc to clear tool search (bb issue #774)
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2012-08-02 12:21:49 -04:00 |
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Jeremy Goecks
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72921fcad3
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Trackster bug fixes: (a) fix 1-base offset bug in LineTracks; (b) fix overview track resolution calculation; and (c) code cleanup via JSHint.
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2012-07-31 11:55:41 -04:00 |
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James Taylor
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a6e8a66317
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tooltips: use a special even to remove tooltips automatically when their element is deleted. fix the bug deleting datasets from this history.
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2012-07-25 17:08:38 -04:00 |
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Jeremy Goecks
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97ffa48a2b
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Add bigwig/bigbed support to Circster. Pack scripts.
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2012-07-24 14:28:08 -04:00 |
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Jeremy Goecks
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15e2cc247d
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Rename paramamonster as sweepster and use bootstrap tooltips in sweepster.
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2012-07-24 14:21:40 -04:00 |
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Jeremy Goecks
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134a5ad252
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Trackster: only draw connector when both mates of a read are drawn; this prevents spurious connectors from being drawn but prevents connectors from being drawn across tile boundaries.
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2012-07-24 14:07:06 -04:00 |
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James Taylor
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901b042c0b
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Add bootstrap transition to bootstrap.js, makes animations much more tolerable
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2012-07-20 16:43:13 -04:00 |
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James Taylor
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3118446f4e
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tooltips: Replace all uses of tipsy with bootstrap style (with the same modifications for placement we previously used for tipsy). This will allow us to start using popovers
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2012-07-20 16:28:23 -04:00 |
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James Taylor
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96f6ea514b
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Add support for bootstrap style tabs, use tabs in edit attributes form
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2012-07-20 14:53:30 -04:00 |
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James Taylor
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25325e9208
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Automated merge with https://bitbucket.org/galaxy/galaxy-central
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2012-07-19 13:56:48 -04:00 |
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Jeremy Goecks
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6a591eb48b
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Viz framework: bigwig fixes and remove unnecessary type casting.
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2012-07-19 10:59:20 -04:00 |
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James Taylor
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ccfc8ce3a7
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Automated merge with https://bitbucket.org/galaxy/galaxy-central
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2012-07-18 18:22:52 -04:00 |
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Jeremy Goecks
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9b2ec24928
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Reintroduce directionality indication to single-block features as it is again compatible with current code.
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2012-07-18 17:52:54 -04:00 |
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Jeremy Goecks
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be3f87204c
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Code cleanup using JSHint.
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2012-07-18 15:46:26 -04:00 |
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Jeremy Goecks
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55d0b2b751
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Fix Trackster bug that was erroneously fetching reference data. Pack script.
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2012-07-15 19:18:26 -04:00 |
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Jeremy Goecks
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ef753ff3f2
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Trackster: make sliders more responsive by waiting before drawing.
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2012-07-13 19:44:21 -04:00 |
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Jeremy Goecks
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e38c49ea15
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Tracks: make composite tracks compatible with recent Backbone enhancements and (b) whitespace cleanup.
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2012-07-13 17:55:29 -04:00 |
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Jeremy Goecks
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40a85af02f
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Use same colors for all tracks in parameter space viz.
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2012-07-12 19:05:48 -04:00 |
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Jeremy Goecks
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94927ee10a
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Pack script.
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2012-07-12 15:53:32 -04:00 |
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Jeremy Goecks
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2176031471
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Fix Trackster bug.
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2012-07-12 15:53:00 -04:00 |
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Jeremy Goecks
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efc17f5f5f
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Render all tracks in Circster using track preferences.
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2012-07-12 13:21:16 -04:00 |
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Jeremy Goecks
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aa4f9ae4e2
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Small viz tweaks.
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2012-07-11 13:19:23 -04:00 |
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Jeremy Goecks
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9894424833
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Add icon to set mode in paramamonster. Move chevron-expand icon from tracks CSS to base CSS.
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2012-07-10 11:31:41 -04:00 |
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Jeremy Goecks
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ca89711e1b
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Visualization framework enhancements: (a) support for unpacking complete genome/trackster visualizations and (b) Circster view now uses genome visualizations rather than individual datasets as model.
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2012-07-09 09:45:34 -04:00 |
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Jeremy Goecks
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d337f612a7
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Trackster bug fixes.
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2012-07-06 16:05:15 -04:00 |
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Jeremy Goecks
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389ca4df36
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Add introductory help text for paramamonster.
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2012-07-05 11:26:24 -04:00 |
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Jeremy Goecks
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5571ce52ea
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Make bookmarks available in shared Trackster visualizations.
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2012-07-05 09:31:19 -04:00 |
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Jeremy Goecks
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05d06eb46a
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Small fixes for 8fd408407f7e.
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2012-07-03 11:49:10 -04:00 |
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Jeremy Goecks
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f4d0e5b8f2
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Bug fixes and enhancements for paramamonster.
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2012-07-03 11:20:10 -04:00 |
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Jeremy Goecks
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4550023b2d
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Fix Trackster bug and remove debugging code. Pack scripts.
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2012-07-02 09:02:58 -04:00 |
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Jeremy Goecks
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3b08d37b98
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Enhancements to enable paramamonster to be used via accessible/published visualizations. Pack scripts.
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2012-07-01 22:04:40 -04:00 |
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Jeremy Goecks
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9399b018a6
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Prevent more than 10 jobs from being run at once in paramamonster. Additional paramamonster bug fixes as well.
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2012-07-01 19:03:16 -04:00 |
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Jeremy Goecks
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c7daf4a38f
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Enable scrolling for tiles area in parameter space visualization.
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2012-06-29 18:15:02 -04:00 |
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Jeremy Goecks
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5d4456146a
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Use Trackster as an entry point for parameter space visualization. Current viewing area, bookmarks, or both can be used as regions in parameter space visualization. Also handle multiple intervals well.
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2012-06-29 17:57:40 -04:00 |
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Jeremy Goecks
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efac106dca
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Trackster modifications to work with new tools API controller.
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2012-06-29 13:17:10 -04:00 |
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Jeremy Goecks
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87eccc903a
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Code cleanup from JSHint.
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2012-06-28 19:11:25 -04:00 |
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Jeremy Goecks
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7b0c49aff8
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Paramamonster polish: (1) size panels appropriately; (2) initialize tool form from saved data; (3) use constant for tile size; (4) bug fixes.
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2012-06-28 18:00:30 -04:00 |
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