Matej Trojak
eb0bfbd98b
polish the code in mako template
2022-10-07 16:30:39 +02:00
Matej Trojak
95c80b4e27
Clean up code & get it working properly
2022-10-07 15:57:17 +02:00
Matej Trojak
e007ba2cb3
Complete ts_visjs package build
2022-10-06 21:49:21 +02:00
Matej Trojak
7370253244
Separated mako template to JS script and CSS styles
2022-10-06 21:43:56 +02:00
Matej Trojak
f4b366c8c9
Add static icons
2022-10-06 21:42:05 +02:00
Matej Trojak
2d2f268346
Init files
2022-10-06 17:13:29 +02:00
David López
fff7d7f0fa
Merge pull request #14437 from reid-wagner/history_contents_fix
...
Fix path for history contents API request.
2022-08-12 10:21:52 +02:00
Reid Wagner
dd0c992a2a
Fix path for history contents API request.
2022-08-11 11:48:05 -05:00
Dannon Baker
2d86fb40a8
Drop defunct msa artifacts
2022-07-05 09:55:51 -04:00
Dannon Baker
aa9ba99f84
Modernization of restored msa wrapper
2022-07-05 09:48:14 -04:00
Dannon Baker
663f4f9770
MSA visualization fix and future proofing.
2022-07-05 09:39:04 -04:00
Dannon Baker
f0e69aaac5
Fix a bug in PCA artifact staging that prevents a plugin rebuild.
...
Without `-p` mkdir will error out if the path exists, killing the build.
2022-06-22 07:15:37 -04:00
Martin Cech
f3c8633f6c
add a hack to navigate around FF bug
2022-05-02 15:10:35 +02:00
Matej Trojak
eaeebb99e0
Create static/dist location
2022-04-20 13:39:34 +02:00
Martin Cech
a83be9ab1f
move the js dependencies to npm local build
2022-04-20 12:55:35 +02:00
Matej Trojak
cc90a8b1af
Improved plot styles
2022-04-20 10:19:20 +02:00
Matej Trojak
a86e55ab79
Added 3D PCA visualisation
2022-04-19 16:46:15 +02:00
Beatriz Serrano-Solano
21e3ba013d
Point to GTN tutorial in visualizations readme
2022-03-25 12:06:57 +01:00
Marius van den Beek
abdfb23e22
Merge pull request #13616 from beatrizserrano/patch-1
...
Point to GTN tutorial in visualizations readme
2022-03-25 12:06:32 +01:00
Beatriz Serrano-Solano
3ffa40e2ad
Point to GTN tutorial in visualizations readme
2022-03-24 19:47:05 +01:00
mvdbeek
75c27a7300
Fix indentation in additional_template_paths.xml
2022-03-24 19:24:45 +01:00
mvdbeek
3818f50af5
Drop interactive environments
2022-03-23 15:43:24 +01:00
Dannon Baker
c14910231c
Fix jqplot_bar import (this was causing a build failure -- was this originally built on a case insensitive system maybe?)
2022-03-07 12:08:34 -05:00
Reid Wagner
71eb4eb65d
Update version number.
2022-01-28 13:40:55 -06:00
Reid Wagner
0b538342a0
Store peptide IDs as strings.
...
These peptide IDs were previously parsed as floats. The result was that
peptides that were too large were rounded, and the ID was no longer
meaningful, resulting in the "PSM Detail for Selected Peptides" table
not being populated.
With this change PEPTIDE_ID field is no longer parsed as a float, and
remains a string.
2022-01-28 13:40:45 -06:00
guerler
43e80d1fcf
Use utilities npm package, remove utilities, fix visualizations
2021-11-13 22:20:07 -05:00
guerler
0658c1607e
Declare asBoolean as module function in nvd3
2021-11-05 20:03:46 -04:00
guerler
7358c85783
Allow visualization to process either legacy string based booleans and true booleans
2021-11-01 00:54:08 -04:00
mvdbeek
497f6a9835
Merge branch 'release_21.09' into dev
2021-10-26 16:30:19 +02:00
mvdbeek
4262610b71
Merge branch 'release_21.05' into release_21.09
2021-10-26 16:29:37 +02:00
Dannon Baker
c8d6d39c5a
Manually hack the built static, too -- this needs followup in dev to be clean and remove artifacts
2021-10-26 08:42:08 -04:00
Dannon Baker
c220f6d55a
The surgical in-place fix to prebuilt msa.js to account for 'at' being in array now in ff/chrome
2021-10-26 08:42:08 -04:00
Dannon Baker
2ade88fabe
Merge remote-tracking branch 'upstream/dev' into webpack5
2021-08-20 09:03:51 -04:00
guerler
ea10fbe89b
Make colors optional in nvd3 visualizations
2021-08-02 10:38:42 -04:00
Dannon Baker
7586efd98a
Update remaining templates to new bundle entrypoints
2021-07-27 08:55:55 -04:00
Bjoern Gruening
bfbb332fc7
cleanup the supported filestypes for Nora
2021-03-05 14:47:31 -05:00
Dannon Baker
43e5ee0e64
Nora visualization version bump incorporating a few upstream bugfixes
...
(protocol fix supporting https, which was noticed on on usegalaxy.org,
more)
2021-02-24 22:45:08 -05:00
Dannon Baker
a93ee16dc8
Fix entrypoint
2021-01-12 08:49:17 -05:00
Dannon Baker
afc87f99e4
Test deploy w/ prebuilt files
2021-01-12 08:48:21 -05:00
Bjoern Gruening
8afa197856
new config
2021-01-10 08:00:57 -05:00
Bjoern Gruening
d7ba38915f
Add the 3D Visualisation from Nora
...
add nora
change nora plugin
(rebased to drop artifacts)
2021-01-10 08:00:29 -05:00
greg
8e41f40041
Change code per review
2020-12-31 07:56:57 -05:00
greg
72747da5be
Expand image formats for viewing in OpenSeadragon
2020-12-30 15:10:56 -05:00
Dannon
18f519c029
Merge pull request #10756 from gregvonkuster/osdragon
...
Add the OpenSeadragon viewer for deep zoom images
2020-12-02 11:31:36 -05:00
Dannon Baker
f744bfa3ab
Tweak OSD plugin build, include images.
...
No need to bundle this since it's prebuilt -- this simply copies it
(including images and maps which were left out before) for staging,
which is faster and more complete.
2020-12-02 09:58:55 -05:00
greg
7649b73afd
Attempt to use the newer viz packaging approach
2020-12-02 09:58:53 -05:00
greg
680357ef5f
Add the OpenSeadragon viewer for deep zoom images
2020-12-02 09:57:56 -05:00
Björn Grüning
4836f19004
Merge pull request #10404 from guerler/add_vis_options
...
Adds Visualization options to Markdown Editor
2020-12-01 22:46:58 +01:00
guerler
52bc2b92c1
Allow videos and audio to be embedded into reports
2020-11-30 18:54:01 +01:00
mvdbeek
eaa64b95c9
Merge branch 'release_20.09' into dev
2020-11-24 10:07:19 +01:00
Matej Trojak