Dave Bouvier
f51266409c
Fixes for test scripts 1010, 1080, 1400, and 1460.
2013-12-17 15:54:55 -05:00
Dave Bouvier
1abe7978d3
Remove debugging code.
2013-12-13 23:23:32 -05:00
Dave Bouvier
d4e4697a21
Update functional tests to account for the changes to when repositories can be uninstalled. Add tool panel section to tool API return value. Move test_db_util import to twilltestcase. Update tool test metadata generation.
2013-12-13 23:07:07 -05:00
Daniel Blankenberg
3ade95a39b
Add ToolShed Functional Tests for Data Managers.
2013-12-06 13:24:29 -05:00
John Chilton
42dc433376
Models: Allow setting install database target when running tool shed functional tests.
2013-12-05 00:20:54 -06:00
John Chilton
5984bbe10c
Models: Introduce app.install_model.
...
All references to galaxy.model.tool_shed_install models should go through this instance. Right now it is a reference to the same ModelMapping instance, but the goal is to allow them to be two different mappings.
2013-12-05 00:20:54 -06:00
John Chilton
79c8f59341
Models: Introduce real class for app.model (ModelMapping).
...
Shared across Tool Shed and Galaxy to reduce code duplication. Previously this was just a bunch, making it a real class allows placing some shared logic in there.
This refactoring also eliminates some global variables galaxy.model.mapping.Session, galaxy.model.mapping.context, and same for tool shed. This may break things, but these are things that should probably be fixed anyway.
In particular small changes to db_shell.py and a unit test that depended on these global variables have been updated. The functional test frameworks likewise needed to be updated to not depend on these - these changes were more substantial.
To fix these functional tests, I essentially replace old references to global variables in Galaxy with references to global variables just defined in the test framework in test/functional/database_contexts.py (a slight improvement).
2013-12-05 00:20:54 -06:00
John Chilton
d676d5c27b
Mimic Galaxy functional test handling of GALAXY_TEST_DB_TEMPLATE for tool shed functional tests.
...
See 83a95ea606d9fcd15f7554b71804625e203eb1ed for full details (essentially GALAXY_TEST_DB_TEMPLATE can be sqlite file path or URL - will be copied over so original left in pristine state and auto upgraded as needed.
2013-11-27 08:37:30 -06:00
Dave Bouvier
ea57221f12
Functional tests for importing and exporting repositories.
2013-11-25 13:02:09 -05:00
Dave Bouvier
06e959f8b1
Update functional tests to reflect changes in HTML output. Add the ability to browse a running test instance of Galaxy or the tool shed with styles and javascript enabled.
2013-09-24 09:21:41 -04:00
Dave Bouvier
3a55b4aaab
Functional tests for automatically determining the target changeset revision in repository dependencies.
2013-05-17 16:42:48 -04:00
Dannon Baker
c2e9c572fe
Fix (hack) for a suspected circular import preventing tool shed functional tests from running in some environments
2013-05-02 12:51:50 -04:00
Dannon Baker
1c14b4a4a7
Fix toolshed functional tests to not use 'pool_size' with sqlite
2013-05-02 10:45:44 -04:00
Dave Bouvier
9dbf1f4abb
Tool shed functional test enhancements. Tests for 8-bit ASCII characters displayed in repository files. Tests for using the mercurial API to simulate a command line push. Tests for deleting tool dependencies.
2013-04-05 11:18:39 -04:00
Greg Von Kuster
ae39ab8f2b
Rename community_wsgi.ini.sample to be tool_shed_wsgi.ini.sample, run_community.sh to run_tool_shed.sh, and fix references to these files in the code.
2013-03-18 10:24:03 -04:00
Dave Bouvier
9d4598deb0
Add repository counts to install and test repository summary output. Add functional tests for repositories with datatype converters. Add functional tests for browsing Galaxy utilities. Add functional tests for the Galaxy update manager. Enhance functional tests to verify behavior when a repository is deleted. Change code style to be compliant with Galaxy team standards.
2013-03-13 12:48:55 -04:00
Greg Von Kuster
f539d3071b
Change the name and path of the community webapp to be tool_shed.
2013-02-27 16:23:19 -05:00
Dave Bouvier
e5ecb33767
Tool shed functional test enhancement, made the grant_write_access method more robust, added functional test for contacting a repository's owner.
2013-02-20 14:33:04 -05:00
Greg Von Kuster
35444f1daa
Uncomment temporary file cleanup block in tool shed functiona tests.
2013-02-04 15:22:53 -05:00
Dave Bouvier
e34bc17457
Tool shed functional tests for complex repository dependencies, detection and setting of metadata for invalid repository dependencies. Fixes for detecting and displaying invalid repository dependencies.
2013-02-04 11:51:42 -05:00
Dave Bouvier
aee8516c04
Uncommented cleanup method in functional_tests.py.
2013-02-01 11:43:40 -05:00
Dave Bouvier
c11ea0e2ec
Tool shed functional tests for complex repository dependencies. Tool shed functional tests for reserved strings in repository and user names. Tool shed functional test enhancements.
2013-02-01 11:42:18 -05:00
Dave Bouvier
e0a308f22c
Pass in a temporary file as migrated_tools_conf, so repositories without tools end up in the right location.
2013-01-30 14:57:16 -05:00
Dave Bouvier
8a47721a5a
Tool shed functional tests for automated installation, reinstallation, and reactivation of repository dependencies. Enhancements to tool shed functional test framework.
2013-01-11 17:02:42 -05:00
Dave Bouvier
865f00b6c9
Tool shed functional test enhancements - circular repository dependencies, tool panel sections.
2013-01-09 09:52:46 -05:00
Dave Bouvier
f6e343d385
Tool shed functional test enhancements. Functional tests for uninstalling, deactivating, reinstalling, and reactivating installed repositories.
2012-12-21 12:47:30 -05:00
Dave Bouvier
35471d28e7
Make functional tests explicitly specify which shed tool config to use.
2012-12-21 10:33:18 -05:00
Dave Bouvier
2112bb7288
Fix for installing tool shed repository when tool_dependency_dir is not set. Toll shed functional test enhancements.
2012-12-18 14:48:14 -05:00
Dave Bouvier
de45c8e7ad
More tool shed functional test enhancements.
2012-12-14 16:20:22 -05:00
Greg Von Kuster
fb5a0b2392
Don't munge the Galaxy root's tool_data_table_conf.sml file or the shed_tool_data_table_conf.xml file when running tool shed functional tests.
2012-12-14 10:59:53 -05:00
Dave Bouvier
1d12ce3899
Functional tests for repositories with workflows.
2012-12-14 09:38:23 -05:00
Dave Bouvier
1b15174304
Added functional tests to verify repository installation on the Galaxy side.
2012-12-12 16:56:14 -05:00
Dave Bouvier
54fc9ff1d5
Functional tests for n levels of circular repository dependencies.
2012-12-11 14:29:28 -05:00
Dave Bouvier
97614e1374
More tool shed functional test enhancements.
2012-12-10 14:41:14 -05:00
Greg Von Kuster
2faaca67d7
More enhancements for hte tool shed functional test framework.
2012-11-29 14:39:31 -05:00
Dave Bouvier
5ba52bb7da
Fixed functional test script creating stray directories in galaxy root.
2012-11-29 13:06:02 -05:00
Greg Von Kuster
b7e8de8037
Fixes for tool shed functional tests.
2012-11-29 12:42:04 -05:00
Dave Bouvier
b9fc04f3d5
Added more functional tests for basic tool shed repository features.
2012-11-28 15:21:23 -05:00
Greg Von Kuster
1149e08ef7
Add the framework components to enable creating a functional test framework for the tool shed.
2012-11-13 13:49:09 -05:00
Dave Bouvier