Jeremy Goecks
e4ff2da11b
Refactor tabular chunked display into Backbone and use for displaying tabular data.
2013-02-04 12:37:32 -05:00
Carl Eberhard
9d6d64684b
history panel: ensure deleted or purged datasets are considered ready to the updater; pack scripts
2013-02-04 12:14:23 -05:00
James Taylor
260228e8b1
Add some missing files
2013-02-03 23:22:16 -05:00
James Taylor
56a81d0134
Support for using Sentry for error logging. If sentry_dsn is set in
...
universe_wsgi.ini, then:
- A middleware will be installed that send thrown exceptions to sentry
- All logging messages of level WARN and above will be sent to sentry
- All pages extending base/base_panels will have javascript errors
captured and sent to sentry
2013-02-02 17:56:55 -05:00
Jeremy Goecks
0a82687368
Remove debugging statement.
2013-02-01 17:49:25 -05:00
James Taylor
6bcbe88102
Use the select2 library for large select boxes rather than our custom
...
implementation based on jquery autocomplete.
2013-02-01 16:49:16 -05:00
Jeremy Goecks
517fb61e20
Fixes for 149f0fc and pack scripts.
2013-01-30 10:54:15 -05:00
Jeremy Goecks
122d274a6a
Add metadata support to JavaScript dataset objects.
2013-01-29 16:41:04 -05:00
Carl Eberhard
ba73ae7c33
history panel: log responseText of history-model update errors; pack scripts
2013-01-28 16:22:47 -05:00
Jeremy Goecks
409ba63a4f
Grid framework refactoring to increase speed and ease of debugging: (1) create and use Backbone object for grid; (2) move grid javascript to its own file; (3) remove webapp parameter; (4) augment search box style so that search button does not wrap. Pack scripts.
2013-01-28 14:02:25 -05:00
Joachim Jacob
111263923d
Changed wording from unpause to resume, in accordance with corresponding history menu item.
2013-01-28 16:46:12 +01:00
Carl Eberhard
612be51063
history panel: fix to edit url in failed_metadata hda smallwarningmessage
2013-01-25 15:05:38 -05:00
Carl Eberhard
b12eb16aba
api/history_contents, index: handle hda_dict building exceptions by appending an error-state hda_dict (instead of 'fail-on-first'); history panel: handle bootstrapped and ajax hda api exceptions more gracefully, show hda api exceptions as hdas in the error state.
2013-01-18 16:32:05 -05:00
Carl Eberhard
f3f4ef46ee
history panel: Show/enable display icon-button for non-ready-state hdas
2013-01-18 10:45:20 -05:00
Jeremy Goecks
e39389b34b
Default to first chromosome if viewport exists but is empty.
2013-01-10 15:26:21 -05:00
Daniel Blankenberg
979c1a6a16
Pack scripts.
2013-01-07 11:45:30 -05:00
Daniel Blankenberg
fce8cce834
Fix for workflow editor when a missing tool is connected to a valid tool. Javascript error would cause the 'Loading worflow editor...' modal window to spin indefinitely.
2013-01-07 11:45:26 -05:00
Carl Eberhard
fc4ca70d27
history panel: panel was not showing deleted datasets when a dataset was purged (even when set to 'include deleted datasets') - fix by using purge_async; history panel: fix history-options menu checkbox with new font awesome class format; pack scripts
2013-01-04 10:57:18 -05:00
Carl Eberhard
0eafc2e21a
history_contents, index & show: add force_history_refresh key/value; history panel: fix broken addHdas when used via the updater, add force_history_refresh to reload the history panel when an hda/tool requests it; pack scripts
2013-01-02 16:30:24 -05:00
Carl Eberhard
52fb3b17b5
pack scripts
2012-12-20 12:35:09 -05:00
Carl Eberhard
dbf4343ddb
base-mvc: fix to handle IE console methods being objects; history panel: handle workflow hide on finish using state:ready event
2012-12-20 12:25:09 -05:00
Carl Eberhard
eec1010689
history_panel: do not re-render panel when an hda is deleted
2012-12-19 17:08:21 -05:00
Carl Eberhard
a869f9a348
pack scripts
2012-12-19 15:49:03 -05:00
Carl Eberhard
cc190d7449
history panel: fix delete function to use show_deleted
2012-12-19 15:46:55 -05:00
Carl Eberhard
b15c727274
merge staging:140b1d164818 to central
2012-12-18 15:02:46 -05:00
Carl Eberhard
f91a65baa6
pack scripts
2012-12-18 14:51:26 -05:00
Carl Eberhard
7649f3b942
merge staging:454638eb2434 to central
2012-12-18 14:37:54 -05:00
Carl Eberhard
f2e3f9db5f
history panel: fix to js behaviors on late-rendered hda bodies
2012-12-18 13:53:55 -05:00
Jeremy Goecks
435079f6cd
Use slideUp rather than hide for pretty hiding of HDAs when removed.
2012-12-18 12:02:56 -05:00
Jeremy Goecks
f55edeb9f5
Implement asynchronous deletion for HDAs. Pack scripts.
2012-12-18 10:40:43 -05:00
Carl Eberhard
8e2a484a0b
history panel: do not render body html until hda is expanded
2012-12-14 15:41:51 -05:00
Jeremy Goecks
324a69d64e
Trackster: when creating a visualization, default the view to the first chromosome.
2012-12-11 16:47:54 -05:00
Jeremy Goecks
113887f457
Trackster: use tile region in place of tile index for simplicity.
2012-12-10 16:08:44 -05:00
Jeremy Goecks
ab88d9c87d
Trackster: use underscore methods to simplify tile search/iteration and remove old debugging statement.
2012-12-10 15:47:05 -05:00
Jeremy Goecks
a59aab8936
Trackster: remove unused var.
2012-12-10 15:38:57 -05:00
Jeremy Goecks
7d30dcfaa1
Trackster: do not use width parameter in draw helper because it's not needed anymore.
2012-12-10 15:31:38 -05:00
Carl Eberhard
9664fa077a
pack_scripts
2012-12-07 14:36:44 -05:00
Carl Eberhard
fc078023b7
ui.js: fix to bad template reference
2012-12-07 14:13:25 -05:00
Carl Eberhard
7a409d6ef0
clean up; pack
2012-12-07 14:00:51 -05:00
Carl Eberhard
b52e6d4113
ui: adding PopupMenu view as alternate to make_popup_menu and allow changing option text, adding/removing options, and adding checkmarks for togglable options; index.mako: use PopupMenu for history-options-button; history panel: use alternate_history.mako to add 'collapse all', 'Include hidden datasets'(toggle), 'Include deleted datasets'(toggle) to history-options-button; alternate_history.mako: include better system for debugging js when changing source directly is problematic (main/test); pack_scripts;
2012-12-07 13:56:53 -05:00
Carl Eberhard
7d79c06925
history panel: fix to trackster links when dbkey is empty; pack_scripts
2012-12-06 17:34:18 -05:00
Carl Eberhard
feddd2bf9f
history panel: fix download popup for uploaded files with meta files (bam) by moving url rendering from initialize to render; pack scripts
2012-12-06 16:33:18 -05:00
Carl Eberhard
1314981bb7
base/_panels.mako: IE console protection; history panel: move hda updater into history-model (from HDACollection), handle new hdas more gracefully, handle hidden hdas that move into the ready states.
2012-12-04 14:43:49 -05:00
Carl Eberhard
50bf56a5d4
history panel: comment out console statements; controllers/visualization: remove non-2.5 compliant 'with' statement
2012-11-29 17:43:15 -05:00
Carl Eberhard
58ee5ce033
LazyDataLoader.js: now handles NaN/Infinity/-Infinity as null, allows overriding jQuery's datatype converters; controllers/root: added echo_json for debugging/testing
2012-11-29 13:32:44 -05:00
Carl Eberhard
14d09d9dec
scatterplot: add header discovery from first dataset line; fix animation; better hover info; fix column selection; pack scripts
2012-11-28 10:45:01 -05:00
Carl Eberhard
0a65b4947a
scatterplot: renaming/re-organization pass; layout change to vertical tabs and inclusion of chart under tabs; pack scripts
2012-11-27 11:19:32 -05:00
Carl Eberhard
db858dea29
history panel: documenting fix to show display and edit attributes buttons for HDA in the error state.
2012-11-21 14:02:58 -05:00
Carl Eberhard
96a72cda1c
history panel: moved refresh into 'History' header bar. Moved 'Collapse Expanded Datasets', 'Show/Hide Deleted Datasets', and 'Show/Hide Hidden Datasets' into 'History' gear menu. Removed gear menu from current history. Packed scripts.
2012-11-21 13:28:33 -05:00
Carl Eberhard
d64a1a870f
scatterplot: fix column selection broken in 7002f41
2012-11-20 15:42:01 -05:00
Jeremy Goecks