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Commit Graph
170 Commits
Author SHA1 Message Date
Sveinung Gundersen b0e13e5149 Added "requires_path_in_url" and "requires_path_in_header" attributes to entry points for tools. Sendoff to gx-it-proxy. Cleanup 2023-11-15 12:54:14 +01:00
Sveinung Gundersen 51db30370c Using label instead of name to identify entrypoint 2023-11-15 12:54:14 +01:00
Sveinung Gundersen 05f8de5d98 Updated JupyTool, Open Refine, Guacamole Desktop, and RStudio tools to potentially support path-based proxy 2023-11-15 12:48:39 +01:00
Marius van den Beek eecaeb7fad Merge pull request #15313 from pcm32/patch-14 
Update cellxgene interactive tool to 1.1.1
 2023-10-20 15:48:14 +02:00
mvdbeek 913182fac9 Merge branch 'release_23.1' into dev 2023-08-31 13:04:47 +02:00
Cameron Hyde 517ca97c03 Remove render.py script from iSEE 2023-08-30 09:50:48 +10:00
Sandy Rogers 330310e69f Update interactivetool_mgnify_notebook to v1.2.2 2023-08-04 11:28:39 +01:00
Sandy Rogers 8a1b58caf0 Update MGnify interactive tool to v1.1.0 2023-06-02 17:34:00 +01:00
Pablo Moreno 1741fa45ee Some tabs to spaces 2023-03-28 10:19:54 +01:00
Pablo Moreno 0b20473129 Layer and optionally make var field unique. 2023-03-27 15:06:15 +01:00
Pablo Moreno 703751b65c Avoid errors automatically detected by galaxy due to stderr output 2023-03-08 13:17:11 +00:00
Pablo Moreno 999322b354 Adds previous version as separate file 2023-03-07 12:05:10 +00:00
Pablo Moreno e9e8f9be27 Change name and tutorial link 2023-03-07 12:03:34 +00:00
Pablo Moreno acc34f6d21 Adds help 2023-03-07 08:59:43 +00:00
Anup Kumar 56a2ace72d Update interactivetool_ml_jupyter_notebook.xml 
Add changes to GPU Jupyterlab tool based on Jupytool
 2023-01-24 16:02:15 +01:00
Pablo Moreno acd862c632 Clean up 2023-01-16 17:29:22 +00:00
Pablo Moreno b860465f9c Handling of files not indexed by gene symbols and output recovery 2023-01-16 17:28:43 +00:00
Pablo Moreno 998cd562c1 Update cellxgene interactive tool to 1.1.1 
Call is the same on 1.1.1, at least as it is used here. Will try to add some options here as well (to specify gene symbols field and others).
 2023-01-16 15:05:43 +00:00
Björn Grüning 5f2b31b088 Merge pull request #15068 from bebatut/pavian-gxit 
Add interactive tool for Pavian
 2022-12-10 15:06:19 +01:00
Björn Grüning 7eea95e7d6 use versioned image instead 2022-12-10 13:03:36 +01:00
Dannon 8095fb7460 Merge pull request #14950 from bebatut/interactivetool_mgnify_notebook 
Add interactive tool for Mgnify Jupyter lab
 2022-12-09 11:53:59 -05:00
Björn Grüning 128c2c53ac Update interactivetool_mgnify_notebook.xml 2022-12-09 16:17:17 +01:00
bebatut 012c448227 Make the tool parsing input data 2022-11-28 14:44:28 +01:00
Bérénice Batut c390c7256a Add interactive tool for Pavian 2022-11-25 14:03:48 +01:00
Björn Grüning 0f9a364396 used tag container version 2022-11-15 23:06:20 +01:00
Björn Grüning d6a2feb270 remove not used inputs 2022-11-09 15:00:42 +01:00
Bérénice Batut 67608c274e Add interactive tool for Mgnify Jupyter lab 2022-11-08 17:12:03 +01:00
Anup Kumar 4052551b7d Update interactivetool_ml_jupyter_notebook.xml 2022-11-03 10:03:40 +01:00
Daniel Blankenberg 689a91d83b superfluous 2022-07-12 12:20:46 -04:00
Daniel Blankenberg 4a83e6f04d Fixes for JupyTool, and overlapping versions with jupyter. 2022-07-11 18:06:35 -04:00
Marius van den Beek 00333722fd Merge pull request #13606 from blankenberg/jupytool 
Add JupyTool, user-configurable interactive Jupyter-based tool.
 2022-06-15 10:41:47 +02:00
mvdbeek 3ce6a1687c Keep version lineage 2022-06-14 18:46:15 +02:00
Gianmauro Cuccuru 92a10ebe9d drop detect_errors 2022-04-26 14:52:30 +02:00
Gianmauro CuccuruandMarius van den Beek f402de57f1 Update tools/interactive/interactivetool_climate_notebook.xml 
Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com>
 2022-04-26 14:48:51 +02:00
Gianmauro CuccuruandMarius van den Beek 58d48caa44 Update tools/interactive/interactivetool_jupyter_notebook.xml 
Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com>
 2022-04-26 14:48:22 +02:00
Gianmauro CuccuruandMarius van den Beek 3a8fda196f Update tools/interactive/interactivetool_metashark.xml 
Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com>
 2022-04-26 14:48:09 +02:00
Gianmauro CuccuruandMarius van den Beek 4eb305c70d Update tools/interactive/interactivetool_pangeo_notebook.xml 
Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com>
 2022-04-26 14:47:54 +02:00
Gianmauro CuccuruandMarius van den Beek 41adb59151 Update tools/interactive/interactivetool_pangeo_notebook.xml 
Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com>
 2022-04-26 14:47:18 +02:00
Gianmauro CuccuruandMarius van den Beek 9bdbb381dd Update tools/interactive/interactivetool_rstudio.xml 
Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com>
 2022-04-26 14:47:05 +02:00
Gianmauro CuccuruandMarius van den Beek 513c873e0c Update tools/interactive/interactivetool_vrm_editor.xml 
Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com>
 2022-04-26 14:44:35 +02:00
Gianmauro Cuccuru 73be453f38 update IT rstudio 
co-authored by @bgruening and @mvdbeek
 2022-04-26 12:19:47 +02:00
Gianmauro Cuccuru 86a27dead3 update IT jupyter notebook 
authored by @bgruening
 2022-04-26 12:17:49 +02:00
Gianmauro Cuccuru 04820a6306 add IT vrm editor 
authored by @annefou
 2022-04-26 12:16:28 +02:00
Gianmauro Cuccuru 1955bf3e0b add IT pangeo notebook 
authored by @annefou
 2022-04-26 12:15:53 +02:00
Gianmauro Cuccuru 3767c7ee87 update IT cliamte notebook 
authored by @annefou
 2022-04-26 12:15:03 +02:00
Gianmauro Cuccuru 2a050e7796 add IT metashark 
authored by @yvanlebras
 2022-04-26 12:12:11 +02:00
Daniel Blankenberg 2216a532b0 Update JupyTool 2022-03-23 16:42:31 -04:00
Daniel Blankenberg 62ca0c3424 Update JupyTool. 2022-03-23 16:01:36 -04:00
Daniel Blankenberg f998b1997f Update JupyTool 2022-03-22 12:01:30 -04:00
Daniel Blankenberg c07deb8fa8 Merge branch 'dev' of https://github.com/galaxyproject/galaxy into jupytool 2022-03-22 08:12:53 -04:00