 Jeremy Goecks
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26051b1957
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Trackster: move browser routing into TracksterView so that hash-based location routing works for both private and shared visualizations.
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2014-04-17 09:47:41 -04:00 |
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Nicola Soranzo
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46641daaa7
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Merge galaxy/galaxy-central default branch.
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2014-04-11 12:00:39 +02:00 |
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Jeremy Goecks
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28ddf4bcc2
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Updates to Sweepster to get it working again.
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2014-04-10 17:21:00 -04:00 |
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Nicola Soranzo
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f73d5fba6c
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Fix old wiki links.
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2014-04-10 20:00:45 +02:00 |
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Jeremy Goecks
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9d64557de5
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Trackster: update jQuery selector so that all tool inputs are updated on change rather only <input> elements. Pack script.
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2014-04-08 12:07:50 -04:00 |
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Jeremy Goecks
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5edebad3e6
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Visualization client-side framework: use simpler/faster/boundary-condition insensitive calculation for extracting subsets of reference sequence data.
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2014-04-07 12:21:43 -04:00 |
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Jeremy Goecks
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086e37c557
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Trackster: only draw incomplete features when displaying features, not coverage data. Pack script.
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2014-04-04 16:33:06 -04:00 |
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Jeremy Goecks
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18c2e3fc71
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Trackster: fixes for creating and resizing composite line tracks.
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2014-04-03 14:33:48 -04:00 |
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Jeremy Goecks
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579ebf5157
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Circster fixes: (a) make compatible with new config object; (b) fix formatting issue with negative values; and (c) clean up debugging statements. Pack scripts.
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2014-04-02 10:15:54 -04:00 |
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Jeremy Goecks
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fee4cb7333
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Trackster: CompositeTrack fixes for recent refactoring. Pack script.
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2014-04-02 09:12:07 -04:00 |
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Jeremy Goecks
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573456d475
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Trackster: show drawn reads across all tiles by pooling incompletely drawn reads and drawing them at the end.
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2014-04-01 16:21:32 -04:00 |
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Jeremy Goecks
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e2f56b50f2
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Trackster: drawing performance improvement. Packed scripts.
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2014-04-01 15:09:30 -04:00 |
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Jeremy Goecks
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75d9496e10
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Genome data providers: (a) organize imports and (b) implement random and nth read iterators to downsample deep coverage regions. Use nth read iterator by default because it is the fastest.
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2014-04-01 10:30:12 -04:00 |
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Jeremy Goecks
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597b88a195
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Trackster: (a) default read track block colors to gray in order to show variants; (b) do not set default height of variant track.
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2014-03-26 22:14:10 -04:00 |
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Jeremy Goecks
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ebaa1c39d3
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Visualization JS: fix incorrect method call. Pack script.
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2014-03-26 17:53:07 -04:00 |
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Jeremy Goecks
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cba7a6638f
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Trackster: fix offset bug that was rendering bases incorrectly.
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2014-03-26 17:37:03 -04:00 |
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Jeremy Goecks
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ecef013a11
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Trackster: set maximum label length.
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2014-03-26 15:12:39 -04:00 |
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Jeremy Goecks
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6b6ec0fcfb
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Trackster: remove reference to left_offset in painters because it is not needed.
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2014-03-26 14:46:29 -04:00 |
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Jeremy Goecks
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0d7b0ce91d
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Trackster: consolidate read painters.
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2014-03-26 13:42:54 -04:00 |
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Jeremy Goecks
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62f096460f
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Trackster: (a) fix bug when trying to subset from supersets with messages; (b) display vertical placeholder until bugs are resolved.
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2014-03-25 15:41:40 -04:00 |
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Jeremy Goecks
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5f2714873f
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Trackster: fix bug in edff37d that prevented naming and saving new track visualization.
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2014-03-16 00:06:07 -04:00 |
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Jeremy Goecks
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aea73857b8
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Config.js: make copy of model to avoid by reference errors. Remove debug statements.
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2014-03-15 13:26:03 -04:00 |
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Jeremy Goecks
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233a51e664
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Trackster preferences cleanup.
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2014-03-09 12:51:16 -04:00 |
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Jeremy Goecks
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388c8316d2
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Trackster: replace custom config settings model and view with generic model/view from config.js. Improvements for generic config model/view. Whitespace fixes.
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2014-02-28 15:27:59 -05:00 |
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Jeremy Goecks
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4e098ea2d5
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Trackster: track mouse with vertical line to support visual alignment.
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2014-02-27 16:56:03 -05:00 |
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Jeremy Goecks
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788f023ee9
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Automated merge of stable to default.
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2014-02-26 14:06:19 -05:00 |
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Jeremy Goecks
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7fdb6b2954
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Trackster: location parsing/interpretation fix.
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2014-02-26 14:05:50 -05:00 |
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Jeremy Goecks
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f4b401aa7e
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Automated merge of stable to default.
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2014-02-25 16:43:51 -05:00 |
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Jeremy Goecks
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e6eeee639f
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Trackster bug fixes: (a) ignore arrow keys in location textbox; (b) set title for location textbox; and (c) test low and high correctly when changing location. Pack scripts.
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2014-02-25 16:43:18 -05:00 |
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Carl Eberhard
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ecf9b060c4
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Remove scatterplot from legacy visualization framework (it will no longer appear if you haven't enabled visualization_plugins_directory in your universe_wsgi.ini); clean up; pack scripts
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2014-02-14 10:47:38 -05:00 |
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Jeremy Goecks
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f55fe47d9b
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Circster: (a) fix bad math that led to incorrect track positioning and (b) make gap between tracks a configurable option.
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2014-02-07 15:04:42 -05:00 |
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Jeremy Goecks
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e71c0063d5
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(1) Update Backbone Config objects and (2) add config options to Circster.
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2014-02-06 15:41:05 -05:00 |
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Jeremy Goecks
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c5a5d0347b
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Fix bugs that prevented saving visualizations from Circster. To do this, introduced a mixin for custom toJSON methods. Pack scripts.
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2014-02-05 16:22:17 -05:00 |
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Jeremy Goecks
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adca9fbfff
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Fix bug in read painter.
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2014-01-23 17:43:21 -05:00 |
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Jeremy Goecks
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78661d6561
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Circster: (a) add style sheet and (b) update styles to use smaller labels.
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2014-01-22 12:06:59 -05:00 |
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Jeremy Goecks
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95b5b0a187
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Circster fixes for f4832c4
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2014-01-21 19:50:13 -05:00 |
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Jeremy Goecks
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fa3d4823fb
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Trailing whitespace fixes.
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2014-01-21 17:24:14 -05:00 |
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Aysam Guerler
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b67781ebda
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Upload: Introduce progress button
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2014-01-18 14:48:10 -05:00 |
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Carl Eberhard
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4242f57cbd
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Merge stable
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2013-12-06 12:21:05 -05:00 |
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Carl Eberhard
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ee3921403e
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Visualizations: fixes to phyloviz to allow saving and loading as a visualization
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2013-12-06 12:20:13 -05:00 |
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Jeremy Goecks
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da0967233d
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Trackster: (a) use colors to denote track state and (b) add and use function to show messages.
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2013-11-30 17:00:01 -05:00 |
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Jeremy Goecks
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224071102c
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Trackster: move static CSS settings out of JavaScript and into CSS file.
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2013-11-29 11:41:26 -05:00 |
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Jeremy Goecks
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71f6495d36
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Add backbone dependency to trackster module; this is needed for Trackster router to function. Pack script.
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2013-11-26 15:46:10 -05:00 |
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Jeremy Goecks
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b675432a2c
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Replace Backbone-relational usage with manually model chaining and remove backbone-relational scripts. Fix default colors bug in Trackster. Pack scripts.
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2013-11-26 14:50:41 -05:00 |
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Jeremy Goecks
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d1c091fa11
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Trackster: more improvements for drawing deletions in read and variant track.
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2013-11-18 15:57:15 -05:00 |
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Jeremy Goecks
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d3041bd82e
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Trackster painters: rename y_center variable to y_start to reflect real position.
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2013-11-18 14:18:10 -05:00 |
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Jeremy Goecks
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e5621a9485
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Trackster: add support for detecting and drawing deletions in VCF datasets. Create shared read painter utils that are used by multiple painters.
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2013-11-18 13:55:43 -05:00 |
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Jeremy Goecks
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f9b3c918cf
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More Trackster CSS cleanup.
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2013-11-12 10:10:13 -05:00 |
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Jeremy Goecks
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9869131aae
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Merge stable into default branch
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2013-11-11 13:34:14 -05:00 |
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Jeremy Goecks
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5b0ff952fa
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Trackster visual analysis: (a) fix misreference to name and (b) do not get values for complex tool parameters. Pack script.
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2013-11-11 13:32:31 -05:00 |
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