 Dannon Baker
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03351d2a9f
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Apply black to tools as well
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2022-02-03 09:12:13 -05:00 |
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Nicola Soranzo
|
452aba9ee3
|
Fix remaining issues reported by bugbear; add it to flake8 reqs
|
2021-01-16 05:58:15 +00:00 |
|
|
Nicola Soranzo
|
9b4de72ca6
|
Fix all E722 errors and ignore E741
Introduced in flake8 3.5.0
Fix import order.
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2017-10-24 11:29:09 +01:00 |
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|
Nicola Soranzo
|
d1bc98dfcb
|
Python3: fix remaining print statements
Remove some debugging prints.
Fix import order.
Consolidate exception logging in ToolShed database migrations.
|
2017-10-12 18:34:29 +01:00 |
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|
Nicola Soranzo
|
21b44bf348
|
Fix all E201 and E202 style errors
using the following command:
```
autopep8 -i -r --exclude $(sed -e 's|^|./|' -e 's|/$||' .ci/flake8_blacklist.txt | paste -sd,) --select E201,E202 .
```
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2017-08-17 11:35:39 +01:00 |
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Nicola Soranzo
|
cc336f61c0
|
Make some files compatible with Python3
Also enlarge the set of files tested with flake8 under Python3
|
2016-06-03 19:24:46 +01:00 |
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|
Nicola Soranzo
|
ed4132d9c0
|
Python3: Use open() instead of file()
|
2016-05-17 23:53:16 +01:00 |
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|
Nicola Soranzo
|
39da6c3278
|
Fix the remaining 2180 flake8 errors in tools/ .
|
2016-02-10 18:46:03 +00:00 |
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|
Greg Von Kuster
|
af3b0669aa
|
Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.
|
2008-03-28 15:24:50 +00:00 |
|
|
Greg Von Kuster
|
709d2e1292
|
Fix for get_microbial_data tool.
|
2008-03-26 20:55:18 +00:00 |
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|
Greg Von Kuster
|
749f218f08
|
Changed GALAXY_DATA_INDEX_DIR from an environment variable to a config entry.
|
2008-03-25 14:09:27 +00:00 |
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|
Greg Von Kuster
|
cd52cabd48
|
Eliminated hard-codes paths to locally cached data from tools, requires developers to add softlinks to development environments.
Galaxy developers should execute the following commands in their $UNIVERSE_HOME/tool-data directories:
ln -s /depot/data2/galaxy/alignseq.loc alignseq.loc
ln -s /depot/data2/galaxy/binned_scores.loc binned_scores.loc
ln -s /depot/data2/galaxy/blastdb.loc blastdb.loc
ln -s /depot/data2/galaxy/encode_datasets.loc encode_datasets.loc
ln -s /depot/data2/galaxy/liftOver.loc liftOver.loc
ln -s /depot/data2/galaxy/maf_index.loc maf_index.loc
ln -s /depot/data2/galaxy/maf_pairwise.loc maf_pairwise.loc
ln -s /depot/data2/galaxy/microbes/microbial_data.loc microbial_data.loc
ln -s /depot/data2/galaxy/phastOdds.loc phastOdds.loc
ln -s /depot/data2/galaxy/quality_scores.loc quality_scores.loc
ln -s /depot/data2/galaxy/regions.loc regions.loc
ln -s /depot/data2/galaxy/twobit.loc twobit.loc
|
2008-03-21 18:31:39 +00:00 |
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|
James Taylor
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f788a34fca
|
Moving james-wsgi branch to new trunk.
|
2006-11-15 16:28:21 +00:00 |
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