davelopez and Marius van den Beek
7d00202034
Fix export_remote include metadata flag
...
We were passing 'false' to --export-metadata-files, but it was
considered True (non-zero length string), and the metadata was
always included in the export.
Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com >
2024-08-07 14:46:57 +02:00
Alex Ostrovsky
f884f9b149
Allow any format in export tool
2022-01-11 13:10:03 -08:00
Marius van den Beek and Nicola Soranzo
94881812a0
Tweak tool options
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2021-08-25 18:03:19 +03:00
mvdbeek
ee63fcc736
Allow skipping sanitization of / char
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and allow using collection name as outer directory
2021-08-25 10:51:13 +03:00
mvdbeek
8bf9de4e1a
Provide $input.serialize(), allow wrap_json to serialize collections
2021-05-28 22:49:49 +02:00
mvdbeek
d6e58fb898
Implement export of FileParameter / MetadataFile files
2021-05-27 17:23:42 +02:00
mvdbeek
05d517a384
Mirror collection structure on exported filesystem
2021-05-27 17:21:01 +02:00
mvdbeek
f5d05fb545
Allow creation of subdirectories on export
2021-05-27 17:21:01 +02:00
mvdbeek
a4c0468813
Sanitize exported filenames
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Now can't include leading `.`, `/` and utf null, and is truncated at 255
characters. Duplicate filenames will raise an error.
2021-05-27 17:21:01 +02:00
mvdbeek
920a4b3f77
Provide files to export as json configfile
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This avoids shell limits and quoting issues.
2021-05-27 17:21:01 +02:00
mvdbeek
f24024c0d7
Add name_and_ext shortcut
2021-05-27 17:21:01 +02:00
mvdbeek
97af023140
Enable datatype aliases for stuff that has weird extensions in Galaxy
2021-05-27 17:21:01 +02:00
John Chilton
e9081759ca
Add tool for exporting individual files to Galaxy.
...
Stolen wholesale from EU. Trying to make it a bit more general though.
2021-05-27 17:21:01 +02:00
