 John Davis
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728bbeb296
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Merge pull request #17654 from nsoranzo/ruff_C4_pyupgrade
Code cleanups from ruff and pyupgrade
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2024-03-11 15:21:30 -04:00 |
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Matthias Bernt
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e0e6a6e825
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fix tests
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2024-03-11 18:45:55 +01:00 |
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Matthias Bernt
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5a03b37f0c
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black
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2024-03-11 18:11:02 +01:00 |
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Matthias Bernt
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3dae54a672
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make it a warning
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2024-03-11 15:23:52 +01:00 |
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Matthias Bernt
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4003cb4a74
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remove unused imports
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2024-03-11 13:15:56 +01:00 |
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Matthias Bernt
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082d4656c8
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tool linter: check for lead nodes with unstripped text content
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2024-03-11 12:57:19 +01:00 |
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mvdbeek
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3dbc2c6760
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Merge branch 'release_23.2' into release_24.0
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2024-03-11 11:55:56 +01:00 |
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Matthias Bernt
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4e1a6d3b94
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tool tinter: check for valid bio.tools entries
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2024-03-11 11:47:55 +01:00 |
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Nicola Soranzo
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4588a27c0f
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Code cleanups from pyupgrade
Found by running:
```
make pyupgrade
```
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2024-03-10 03:32:47 +00:00 |
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Nicola Soranzo
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a2018a5e60
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Enable flake8-comprehensions ruff rules
but allow `dict()` calls that make use of keyword arguments (e.g.,
`dict(a=1, b=2)`).
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2024-03-09 19:11:20 +00:00 |
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Matthias Bernt
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5a48f66c46
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use asserts also in test
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2024-03-09 15:10:52 +01:00 |
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mvdbeek
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cdde21604f
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Add basic model import attribute validation
And coerce invalid `deleted` dataset state to `discarded`.
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2024-03-08 15:27:36 +01:00 |
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Matthias Bernt
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e76f5ff4e0
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adad test to allow for Optional list
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2024-03-08 13:05:42 +01:00 |
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Matthias Bernt
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2a7cce03f3
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yaml parsing: fix nested assertions
were forgotten to be implemented
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2024-03-08 12:46:17 +01:00 |
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mvdbeek
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4a57547e84
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Fix job manager unit tests
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2024-03-07 20:05:45 +01:00 |
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John Davis
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5e05e00656
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Merge pull request #17016 from bernt-matthias/topic/stdio-regex-extend
[24.0] Extend regex groups in stdio regex matches
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2024-03-05 14:32:57 -05:00 |
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Nicola Soranzo
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3f0f789b82
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Merge pull request #17556 from kostrykin/files_diff_images
Add `image_diff` comparison method for test output verification using images
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2024-03-04 17:04:44 +00:00 |
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Matthias Bernt
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a8e6e8d5d6
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fix test exit code default
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2024-03-01 22:45:39 -05:00 |
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Matthias Bernt
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6d99463613
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fix test
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2024-03-01 22:45:38 -05:00 |
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Matthias Bernt
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43bdd28bbd
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formating fixes
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2024-03-01 22:45:38 -05:00 |
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Matthias Bernt
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73219583f1
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remove unused variable job_id_tag
was used in the past for log messages which are now gone
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2024-03-01 22:45:38 -05:00 |
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Matthias Bernt
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93b9678e0b
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make regex string
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2024-03-01 22:45:38 -05:00 |
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Matthias Bernt
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666696c666
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extend regex groups in stdio regex matchs
idea came up here https://github.com/galaxyproject/tools-iuc/issues/5629#issuecomment-1807050561
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2024-03-01 22:45:38 -05:00 |
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John Davis
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54294f03cb
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Merge pull request #13918 from bernt-matthias/tabular-improvement
Make columns types an empty list for empty tabular data
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2024-03-01 13:40:33 -05:00 |
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John Davis
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25d95278cb
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Make comment more detailed
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2024-03-01 13:39:51 -05:00 |
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John Davis
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2c966debea
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Merge pull request #17482 from brsynth/feature_datatypes_sbol
Feature SBOL datatypes
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2024-03-01 11:35:35 -05:00 |
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Richard Burhans
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57b4c8b239
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removing quotes
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2024-02-28 12:32:21 -06:00 |
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Richard Burhans
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47b1d58025
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add shm_size based on ShmSize
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2024-02-28 11:51:53 -06:00 |
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Leonid Kostrykin
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8567aced02
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Fix linting issues
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2024-02-27 22:30:21 +01:00 |
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Leonid Kostrykin
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49fe197d8b
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Fix bugs
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2024-02-27 21:40:20 +01:00 |
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Leonid Kostrykin
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d2a40cb955
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Fix linting issues
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2024-02-27 15:21:39 +01:00 |
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Leonid Kostrykin
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1937e2ba78
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Fix bug
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2024-02-27 15:09:38 +01:00 |
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Leonid Kostrykin
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4d800a8f36
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Fix bug
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2024-02-27 14:16:55 +01:00 |
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Leonid Kostrykin
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e5eb5d43be
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Fix linting issues
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2024-02-27 13:29:35 +01:00 |
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Leonid Kostrykin
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f22d051e8a
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Fix bugs
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2024-02-27 13:25:56 +01:00 |
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Leonid Kostrykin
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79967031d0
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Fix bugs
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2024-02-27 13:24:43 +01:00 |
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Leonid Kostrykin
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0d6077db8f
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Fix bugs
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2024-02-27 13:10:25 +01:00 |
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Leonid Kostrykin
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ea1c980701
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Fix pillow usage
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2024-02-27 12:54:48 +01:00 |
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Leonid Kostrykin
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7c447f087d
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Fix pillow imports
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2024-02-27 12:52:27 +01:00 |
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Leonid Kostrykin
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5bf2f3f1a5
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Fix linting issues
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2024-02-27 11:58:34 +01:00 |
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Leonid Kostrykin
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b73091246d
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Fix linting issues
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2024-02-27 11:49:55 +01:00 |
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Leonid Kostrykin
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a1b51ea3c9
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Fix linting issues
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2024-02-27 11:44:35 +01:00 |
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Leonid Kostrykin
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3af5443a45
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Fix linting issues
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2024-02-27 11:35:29 +01:00 |
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Leonid Kostrykin
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56506e49dd
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Fix linting issues
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2024-02-27 11:32:50 +01:00 |
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Leonid Kostrykin
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bcf78ecc28
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Add tests for files_image_diff
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2024-02-27 11:21:36 +01:00 |
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guillaume-gricourt
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1dc9eb9e2e
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tests(datatypes): add SBOL
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2024-02-27 09:56:40 +01:00 |
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John Davis
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51749bf6d3
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Merge pull request #17490 from bernt-matthias/topic/has_size_size
has_size assertion: implement size (as synonym for value)
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2024-02-26 13:42:00 -05:00 |
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Martin Cech
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0d380c4f10
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Merge pull request #17462 from bernt-matthias/topic/fasta-set-meta
Faster FASTA and FASTQ metadata setting
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2024-02-19 21:15:09 +01:00 |
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Matthias Bernt
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f198184350
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add type ignores
for mock
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2024-02-19 16:44:31 +01:00 |
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Matthias Bernt
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d90a101331
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treat empty files correctly
as 0 column files
- refactor type_overrules_type for simplicity
- add tests
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2024-02-19 12:07:37 +01:00 |
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