mvdbeek
29da6fec23
Add selenium test for optional runtime parameter submission
2024-11-19 17:35:04 +01:00
Ahmed Awan
b8dbc5236f
fix selectors unable to find upload start or close buttons
2024-11-07 15:00:27 -06:00
mvdbeek
b5d46aa943
Test workflow module building with dynamic parameters
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and parameter references and validators.
2024-09-30 13:48:03 +02:00
John Chilton
0c711dfa11
Merge pull request #18875 from mvdbeek/fix_data_column
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[24.1] Fix data_column ref to nested collection
2024-09-24 07:26:07 -04:00
mvdbeek
d470587028
Fix data_column ref to nested collection
2024-09-23 18:27:30 +02:00
mvdbeek
b70a7637b9
Fix up exception handling, add test
2024-09-23 17:50:10 +02:00
mvdbeek
076133b018
Add test case for updating workflow name of parent workflow
2024-09-12 10:59:24 +02:00
mvdbeek
1dce8cf75b
Add test for keeping picked dataset's extension in place
2024-09-10 18:50:12 +02:00
mvdbeek
4667cec17b
Add regression test for subworkflow that stops scheduling
2024-08-30 16:46:37 +02:00
John Chilton
5d5f537348
Merge pull request #18734 from mvdbeek/improve_yaml_exception_reporting
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[24.1] Catch and display exceptions when importing malformatted yaml workflows
2024-08-24 11:19:54 -04:00
Ahmed Awan
d7afcb00c6
[24.1] Fix invocation grid selenium that fails intermittently
2024-08-23 19:04:38 -05:00
mvdbeek
a2c304081a
Catch and display exceptions when importing malformatted yaml workflows
2024-08-23 21:56:00 +02:00
mvdbeek
080a0c799b
Fail on expected subworkflow output not found
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This would currently just fail with an exception in the logs.
I ran into this while manually defining a gxformat2 workflow
and not referencing the right step.
2024-08-23 13:27:47 +02:00
mvdbeek
565911e85f
Add test workflow
2024-08-23 13:25:43 +02:00
mvdbeek
2d1680b042
Really do change PJA in test case
2024-08-13 15:22:10 +02:00
Marius van den Beek
cf211c1262
Merge pull request #18661 from mvdbeek/fix_extract_workflow_from_history
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[24.1] Fix extract workflow from history when implicit collection has no jobs
2024-08-07 15:38:45 +02:00
mvdbeek
b30fed83eb
Add extraction test for empty implicit collection
2024-08-07 13:41:01 +02:00
mvdbeek
dfea749b6c
Merge branch 'release_24.0' into release_24.1
2024-08-07 12:58:32 +02:00
Marius van den Beek
f8175ef771
Merge pull request #18552 from dannon/update-h5web
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[24.1] Update h5web
2024-08-06 18:00:56 +02:00
mvdbeek
847ac059d5
Test that we don't reset the file size
2024-08-06 17:33:02 +02:00
mvdbeek
9c507f2b2c
Merge branch 'release_24.0' into release_24.1
2024-07-25 17:23:48 +02:00
Arash
5beb876b6e
Fix encoding issue in ZipstreamWrapper
2024-07-22 18:07:01 +02:00
Dannon and Marius van den Beek
083ea07eae
Update lib/galaxy_test/selenium/test_visualizations.py
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Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com >
2024-07-19 09:24:34 -04:00
Dannon Baker
cdcb5bc8c6
Add basic h5web viz test
2024-07-18 10:48:46 -04:00
mvdbeek
b403bf8237
Add test case for runtime input map over
2024-07-14 20:53:52 +02:00
mvdbeek
b4af9b39e4
Merge branch 'release_24.0' into release_24.1
2024-07-10 15:50:31 +02:00
davelopez
79864d4cad
Add test for default view in job list
2024-07-10 11:11:19 +02:00
davelopez
5f48ca780e
Update test_jobs.py to add a new test for job list collection view
2024-07-10 09:43:55 +02:00
mvdbeek
ee56d70b24
Add test for submitting hdca with deleted elements
2024-07-09 12:32:28 +02:00
mvdbeek
33f27d5456
Merge branch 'release_24.0' into release_24.1
2024-07-01 18:23:55 +02:00
Marius van den Beek
6b8c7f75ba
Merge pull request #18456 from arash77/subworkflows_tags_fix
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[24.0] Fix subwofklow tags serialization type
2024-06-29 12:02:47 +02:00
Arash
9592520737
Add test
2024-06-28 13:42:08 +02:00
mvdbeek
853ec92d82
Merge branch 'release_24.0' into release_24.1
2024-06-17 22:28:46 +02:00
davelopez
84d6971d5e
Use random user in test
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Since we cannot remove the user from the group to restore its previous state we need to use a user that will not be part of other tests to avoid unwanted interactions.
2024-06-13 19:15:40 +02:00
davelopez
fbf903d1e7
Refactor API test for updating a group
2024-06-13 18:24:18 +02:00
davelopez
a8cb547519
Add tests for replacing and removing group users and roles
2024-06-13 16:53:41 +02:00
davelopez
d73a82052b
Increase API test coverage for group update
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The second update does not provide a group_name as we are not changing it. This will fail with the current code as the update payload model is the same as the create one.
2024-06-12 12:40:48 +02:00
John Chilton
821b31c3b2
More structured indexing for user data objects.
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I think I clung to the idea of having two ways to do this too long. I did a bunch of testing with the old way (exposing integer references based on numeric database primary keys). Having a config option that if changed would break everything exisiting is also a symptom of maybe me clinging too hard for too long.
The result of dropping this option is a much cleaner API schema, simpler API objects, and better typing throughout. We can also be more certain of how things entering the Vault are stored - I think being more strucutured about this is good.
Ultimately, the future facing stuff (e.g. OAuth 2.0) is going to require UUIDs so that I can store things like refresh tokens in the store before the object has been fully created.
2024-06-07 19:20:11 -04:00
Nicola Soranzo
0a7de5c79f
Merge branch 'release_24.0' into release_24.1
2024-06-02 17:15:48 +01:00
mvdbeek
0d64837577
Fix global variable
2024-05-31 19:56:54 +02:00
mvdbeek
e2f4043324
Pass init_fast_app in launch_server function
2024-05-31 19:53:11 +02:00
mvdbeek
a8ac6fd7ca
Move tool shed specific driver function to tool_shed.test
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Should fix https://github.com/galaxyproject/galaxy/issues/18282
2024-05-31 19:00:45 +02:00
Nicola Soranzo
6ef6fc911f
Merge branch 'release_24.0' into release_24.1
2024-05-30 13:03:12 +01:00
mvdbeek
2ea3d342cc
Import tool shed url
2024-05-29 15:29:39 +02:00
mvdbeek
b0ea69e418
Fix import order
2024-05-29 13:58:09 +02:00
Marius van den Beek and Nicola Soranzo
74e8d3257b
Make it an f-string
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2024-05-29 13:35:52 +02:00
mvdbeek
5f1ec2b06f
Skip tests that require toolshed to be up if toolshed down
2024-05-29 13:30:22 +02:00
mvdbeek
093dcc8d3d
Merge branch 'release_24.0' into release_24.1
2024-05-28 14:34:20 +02:00
Marius van den Beek
ae9ea865e1
Merge pull request #18214 from mvdbeek/error_messages_when_accessing_datasets_we_cannot_access
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[24.0] Check dataset state when attempting to acces dataset contents
2024-05-24 16:02:33 +02:00
Nicola Soranzo
7ab747506a
Merge pull request #18192 from ahmedhamidawan/prevent_anon_users_run_workflow
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[24.0] Prevent anonymous and inactive users from running workflows
2024-05-23 23:28:33 +01:00
mvdbeek