 carlfeberhard
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9f91b82245
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Client: remove IE7/8 and excanvas polyfills
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2015-11-24 16:12:31 -05:00 |
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carlfeberhard
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2956b12e9b
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Webpack: correct tool menu template loading in requirejs/galaxy.panels.mako by using require.config.map; normalize galaxy_config.root and Galaxy.options.root to Galaxy.root across the templates and js
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2015-11-13 18:05:26 -05:00 |
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carlfeberhard
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372c2e9e43
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Webpack: move data.js into dataset/data.js; pack scripts
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2015-11-12 14:52:11 -05:00 |
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Carl Eberhard
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ef382f7332
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Client: do not remove console statements when compressing; UI, Collections: propagate hasUser to collection panels, style fixes
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2015-03-18 09:30:18 -04:00 |
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Carl Eberhard
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ba20f5f6e1
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Fix bad commit (adding files)
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2015-03-17 10:47:31 -04:00 |
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Jeremy Goecks
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3258a3359f
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Enable Trackster visualizations to be added to Scratchbook via dynamic loading rather than iframes.
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2014-09-29 17:12:03 -04:00 |
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Jeremy Goecks
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6872db6649
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Remove unused code from client-side visualization library.
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2014-08-14 16:41:37 -04:00 |
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Jeremy Goecks
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46d9937ff5
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Fixes for Trackster and Circster, mostly around preference selection and usage.
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2014-07-01 18:27:15 -04:00 |
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Jeremy Goecks
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dc20caec65
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Circster: add config options for min/max values and color.
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2014-06-26 10:56:05 -04:00 |
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Jeremy Goecks
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f8ac447e00
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Small fix for Trackster location routing.
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2014-05-30 19:16:30 -04:00 |
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Jeremy Goecks
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5edebad3e6
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Visualization client-side framework: use simpler/faster/boundary-condition insensitive calculation for extracting subsets of reference sequence data.
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2014-04-07 12:21:43 -04:00 |
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Jeremy Goecks
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579ebf5157
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Circster fixes: (a) make compatible with new config object; (b) fix formatting issue with negative values; and (c) clean up debugging statements. Pack scripts.
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2014-04-02 10:15:54 -04:00 |
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Jeremy Goecks
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ebaa1c39d3
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Visualization JS: fix incorrect method call. Pack script.
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2014-03-26 17:53:07 -04:00 |
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Jeremy Goecks
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62f096460f
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Trackster: (a) fix bug when trying to subset from supersets with messages; (b) display vertical placeholder until bugs are resolved.
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2014-03-25 15:41:40 -04:00 |
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Jeremy Goecks
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c5a5d0347b
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Fix bugs that prevented saving visualizations from Circster. To do this, introduced a mixin for custom toJSON methods. Pack scripts.
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2014-02-05 16:22:17 -05:00 |
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Jeremy Goecks
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95b5b0a187
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Circster fixes for f4832c4
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2014-01-21 19:50:13 -05:00 |
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Jeremy Goecks
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b675432a2c
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Replace Backbone-relational usage with manually model chaining and remove backbone-relational scripts. Fix default colors bug in Trackster. Pack scripts.
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2013-11-26 14:50:41 -05:00 |
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Jeremy Goecks
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5d1ffac35b
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Visualization framework: code cleanup.
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2013-10-11 12:03:55 -04:00 |
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Jeremy Goecks
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7d6d29158a
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Trackster: (a) fix bug that unintentionally modified drawing region; (b) more reference track cleanup; (c) remove console logging statements. Pack scripts.
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2013-10-11 11:53:13 -04:00 |
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Aysam Guerler
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5b1c997998
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Introducing backbone based modal into Trackster and Circster
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2013-09-30 14:11:38 -04:00 |
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Jeremy Goecks
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3e42d82b57
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Trackster: bug fixes and documentation improvements. Pack scripts.
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2013-09-24 17:17:14 -04:00 |
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Aysam Guerler
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5a05a52775
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Unify parameter and url access in front end
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2013-08-20 18:51:47 -04:00 |
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Jeremy Goecks
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979c041d65
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Trackster performance fix: extend Cache to support any object that can be converted to a String. Use this enhancement to avoid creating Backbone objects, which can be slow.
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2013-06-12 16:02:19 -04:00 |
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Jeremy Goecks
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d618359898
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Trackster: fix for subsetting variant tracks.
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2013-05-22 14:47:37 -04:00 |
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Jeremy Goecks
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7d7f04a5b4
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Viz framework fixes: (a) add hda_ldda attribute to API dicts of HDAs and LDDAs; (b) remove summary tree from Circster; (c) make Circster compatible with recent change to get HDAs from API. Pack scripts.
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2013-05-21 14:37:51 -04:00 |
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Jeremy Goecks
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4f3acda1ca
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Visualization framework: replace summary_tree with bigwig datatype for all feature track coverage data, yielding better performance and a standardized approach for working with coverage data. Update Trackster to work with bigwig coverage data.
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2013-05-09 11:44:45 -04:00 |
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Jeremy Goecks
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9c97ac4854
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Trackster enhancements: (a) rename reference data manager to more appropriate name; (b) fetch reference data more readily so that variants can be drawn even when not zoomed way in; and (c) use base letters to denote variants only when there is sufficient room.
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2013-02-28 16:54:26 -05:00 |
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Jeremy Goecks
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a5f4b13c98
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Trackster: add subsetting functionality to data manager and enable subsetting for line tracks.
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2013-02-21 17:10:54 -05:00 |
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Jeremy Goecks
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1791c8f57c
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Trackster: subset reference data when available.
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2013-02-21 14:11:09 -05:00 |
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Jeremy Goecks
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6ebb660cba
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Trackster: prevent data requests for very small regions by using a (configurable) minimum region size. This improves performance when zoomed in on small regions. Pack scripts.
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2013-02-19 10:16:21 -05:00 |
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Jeremy Goecks
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4f8e9afa7f
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Use strict equality operators.
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2013-02-15 12:44:08 -05:00 |
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Jeremy Goecks
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f41b3d3883
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Circster: use chords to denote chromosome interactions data.
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2012-10-23 11:06:27 -04:00 |
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Jeremy Goecks
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069092f96b
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Code cleanup in vis framework.
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2012-10-22 10:47:46 -04:00 |
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Jeremy Goecks
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19d968863c
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Circster, cleanup for fetching more data: do not fetch more data for summary tree and use linear function for fetching more bigwig data.
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2012-10-20 16:39:39 -04:00 |
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Jeremy Goecks
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636e398345
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Make Trackster use generic visualization save functionality.
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2012-10-20 13:16:22 -04:00 |
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Jeremy Goecks
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64670ceb98
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Set up track config in BackboneTrack objects and use config in Circster.
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2012-10-19 14:02:23 -04:00 |
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Jeremy Goecks
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9c953192be
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Add backbone model, collection, and view for configuration settings. Pack scripts.
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2012-10-19 11:55:49 -04:00 |
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Jeremy Goecks
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d0bdd8c525
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When adding datasets to visualization, pass dbky directly rather than in dict.
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2012-10-16 11:32:55 -04:00 |
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Jeremy Goecks
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be2fb52e6b
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Circster: enable tracks to be added dynamically.
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2012-10-16 11:26:42 -04:00 |
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Jeremy Goecks
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ef2c8f54ec
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Viz client-side framework: generalize add_datasets function and change name to select_datasets, general code cleanup, and packed scripts.
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2012-10-12 17:22:51 -04:00 |
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Jeremy Goecks
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acd0a5d6ec
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Circster: support data indexing and loading for datasets not previously indexed. Also add visual indicator when drawing/loading tracks.
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2012-10-11 10:31:13 -04:00 |
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Jeremy Goecks
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f0ef51b957
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Enable circster to accept a dataset to add to visualization. Also, make visualization creation more flexible and some small refactoring for JS visualization objects.
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2012-10-05 16:01:55 -04:00 |
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Jeremy Goecks
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69109c9d09
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Circster: show more data when zoomed in.
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2012-10-02 11:17:22 -04:00 |
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Jeremy Goecks
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992669d816
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Viz/UI framework fixes and enhancements. Pack scripts and add new packed scripts.
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2012-09-28 12:07:56 -04:00 |
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Jeremy Goecks
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337b9938b0
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Viz framework: (a) fix embedded visualizations and (b) bookmarking.
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2012-09-27 17:35:04 -04:00 |
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Jeremy Goecks
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e788315e30
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Fixes for ReferenceTracks to make compatible with recent refactoring.
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2012-09-25 10:52:28 -04:00 |
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Jeremy Goecks
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dde34357f4
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Viz framework: (a) improvements in setting dataset type when returning infomation; (b) transition Circster to use GenomeDataManager rather than custom data structures.
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2012-09-25 09:18:00 -04:00 |
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Jeremy Goecks
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75f936db5f
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Add requireJS support for data, visualization, tools and update dependencies.
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2012-09-21 10:12:01 -04:00 |
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James Taylor
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e6ce7b2895
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trackster: merge
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2012-09-17 12:06:02 -04:00 |
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James Taylor
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207ec0bf6f
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trackster: starting to split tackster up and load using require.js
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2012-09-17 11:49:31 -04:00 |
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