carlfeberhard
d72dd3735c
Client, polyfills: check for sessionStorage using a more cross-browser (apparently) way
2015-12-09 14:10:36 -05:00
Martin Cech
fe1c9dd293
Merge pull request #1251 from jmchilton/workflow_labels_2
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Workflow Editor UI for Step Labels
2015-12-08 12:04:26 -05:00
carlfeberhard
6ba86d89bc
UI, Citations: don't create new BibtexParser, remove debugging
2015-12-08 10:57:41 -05:00
carlfeberhard
5ff09896f7
UI, Citations: fix require of bibtex parser
2015-12-08 10:27:09 -05:00
John Chilton
3f8950628c
Workflow label UI refinement.
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- Escape workflow labels in mako.
- Handle unlabelling steps properly (restore original node name to node and editor form titles).
2015-12-08 09:22:11 +00:00
Martin Cech
ef0b6cc459
show notifications as Toasts and not like JS alerts (bleh)
2015-12-07 15:07:14 -05:00
John Chilton
3a023f4cae
Merge pull request #818 from mvdbeek/cross_toolshed_tool_fetching
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Look up installed tools from different toolshed(s)
2015-12-06 15:56:31 -05:00
carlfeberhard
b55635f71b
Client, upload: fix passing of nginx_upload_path and ftp_upload_site to upload-view, fix default nginx_upload_path in configuration serializer
2015-12-06 12:10:31 -05:00
John Chilton
e3161b4671
Add support for workflow step labels in editor.
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- If a step has a label, display it in the step editor side panel title.
- Allow clicking the title to change the label.
- Display the label (if set) as the workflow node box title.
- Add icon to workflow node since the title might not be related to type anymore.
- Enforce unique labels accross the workflow in the editor.
- Qunit test cases for some of this behavior and other recent changes.
2015-12-06 12:27:13 +00:00
John Chilton
d7ac52f6bb
Add icons to existing workflow steps in workflow editor.
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Tools have an icon there.
2015-12-06 10:49:17 +00:00
John Chilton
d18c75ceb8
Bring gneric and tool module styles into alignment in workflow editor.
2015-12-06 10:43:09 +00:00
John Chilton
f6d26c9ee6
Small refactor making workflow views and modules tad more generic.
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- Reduce duplication between initializing generic modules and tool modules.
- Switch tool_id to content_id as variable names throughout the client.
- Rename get_tool_id to get_content_id on workflow modules.
- Add some minimal documentation to the workflow module about get_content_id.
Downstream in the subworkflow commit I switch the over-the-wire communication to use content_id instead of tool_id also and use content_ids to refer to workflow ids in subworkflow moduls.
2015-12-06 10:43:09 +00:00
John Chilton
1fdde2cb4d
Refactor generic side workflow editor panel toward backbone.
2015-12-05 16:37:08 +00:00
Björn Grüning
6126bd0e93
Merge pull request #1214 from jmchilton/format_2_1
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Small enhancements in workflow inputs and outputs
2015-12-05 21:37:50 +01:00
Marius van den Beek
4f1359a0a6
Merge branch 'dev' of github.com:galaxyproject/galaxy into cross_toolshed_tool_fetching
2015-12-05 12:34:37 +01:00
Marius van den Beek
1be4f85404
Add messages inform users of changes in the tool_id.
2015-12-05 12:28:46 +01:00
John Chilton
c91a2eb339
Multi data parameter improvements.
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Allow multiple collections to be fed to a multi data parameter in one reduction step. Fixes #750 and will really simplify certain classes of tools.
Rebased original with fixes for rerun of such reductions.
Manually tested workflow execution and everything seems fine. The workflow editor already thought this was possible, so that is another bug corrected by this enhancement.
To run the associated API test, execute the following command:
./run_tests.sh -with_framework_test_tools -api test/api/test_tools.py:ToolsTestCase.test_reduce_multiple_lists_on_multi_data
Conflicts:
static/maps/mvc/dataset/dataset-choice.js.map
static/maps/mvc/form/form-select-content.js.map
static/scripts/mvc/form/form-select-content.js
2015-12-04 20:41:21 +00:00
John Chilton
e9e73f4828
Remove dated comment.
2015-12-04 20:40:29 +00:00
John Chilton
7b3fa824b6
Update worklfow editor representation of workflow outputs.
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Modified this for the workflow export representation but this needed to be updated for the workflow editor because they shared some code in the manager. This was going to be needed downstream when I add labels and uuids to workflow outputs anyway.
2015-12-04 20:36:18 +00:00
John Chilton
3d0723c812
JS Model abstractions for dealing workflow outputs.
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Need to modify how these are represented so I want the logic centralized in the model... also the logic should be centralized in the model.
2015-12-04 20:36:16 +00:00
carlfeberhard
9e8068f367
(merge dev)
2015-12-04 13:17:29 -05:00
Eric Rasche
42b6da8755
Comment out debugging
2015-12-04 11:46:00 -06:00
Eric Rasche
564f12c50f
Remove icons
2015-12-04 11:46:00 -06:00
Eric Rasche
1cc57b1eb2
Add icons and reorganise history menu
2015-12-04 11:46:00 -06:00
carlfeberhard
b72035c9fc
Webpack: fix/re-work the pub-sub connection between the quotameter and the history panel so that the meter updates properly when a new dataset is added
2015-12-03 16:01:18 -05:00
carlfeberhard
a3e3bde6a2
Webpack: restore redirect for after login when require_login; remove allowed_paths for require_login: /index, /tool_menu, /masthead, library/browse, history/list, dataset/list
2015-12-03 14:35:13 -05:00
carlfeberhard
963d8637e8
Webpack: remove cruft galaxy.tools.js and (remnants of) galaxy.workflows.js
2015-12-02 15:41:48 -05:00
carlfeberhard
002bc6b40a
(merge dev)
2015-12-02 12:00:51 -05:00
Dannon Baker
84464288b1
Merge pull request #1184 from guerler/fix_download_links_002
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Filter download links, avoid warning dialog
2015-12-01 10:19:22 -05:00
Nate Coraor
9e28f2e786
Merge branch 'release_15.10' into dev
2015-11-30 14:13:26 -05:00
guerler
2e97553194
Filter download links
2015-11-28 04:35:58 -05:00
carlfeberhard
f397584538
Webpack: add link rel='index' with href to Galaxy.root, rework browser testing to use the same when redirecting to error pages
2015-11-25 14:17:03 -05:00
carlfeberhard
68da000470
Client, rgenetics: 'Nuke 'em all' - R.Lazarus
2015-11-25 10:12:02 -05:00
carlfeberhard
e3e9579a81
Webpack: pack scripts, move galaxy-app-base.js to galaxy.js
2015-11-24 16:49:03 -05:00
carlfeberhard
9f91b82245
Client: remove IE7/8 and excanvas polyfills
2015-11-24 16:12:31 -05:00
carlfeberhard
d921b42431
Webpack: remove mvc/app
2015-11-24 12:34:09 -05:00
carlfeberhard
b15a408293
Client: remove duplicate rgenetics directory tools/rgenetics
2015-11-24 12:30:03 -05:00
carlfeberhard
f3f8fef28a
Webpack: move Galaxy object creation from mako to app js, clean up and localize page, panels, and app
2015-11-24 12:18:52 -05:00
Martin Cech
e19b7f656f
fix the extra slash in URL when creating folder
2015-11-23 15:14:15 -05:00
Martin Cech
39bc057ef9
fix whitespace
2015-11-23 15:12:05 -05:00
Martin Cech
e142beaffe
replace wrong class name
2015-11-23 15:08:25 -05:00
Martin Cech
95507c5d02
fix whitespace
2015-11-23 15:07:40 -05:00
guerler
368da171f5
Call onbeforeunload before hiding iframe through display()
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Validated message
2015-11-23 11:12:03 -05:00
John Chilton
a664deeee7
Merge pull request #1130 from dannon/repack_dev
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Enforce client build deps are up-to-date. Rebuild style with lessc > 2.5
2015-11-20 16:15:35 -05:00
carlfeberhard
119e26f4e5
Merge pull request #1142 from dannon/menu_onclick_addition
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Menu onclick addition
2015-11-20 15:15:08 -05:00
carlfeberhard
844facd1f1
UI, Lists: throttle selector animation when number of list items > 20
2015-11-20 14:55:14 -05:00
Dannon Baker
81f1b7f8e0
Remove debugging logic and shortcut.
2015-11-20 13:17:46 -05:00
carlfeberhard
dba7e6640f
Webpack: correct handlebars template generation to return an AMD function - this normalizes import of templates between webpack and require, fix sweepster tools import and templates
2015-11-20 12:36:05 -05:00
Dannon Baker
f0e28555af
Support onclick for menu items.
2015-11-20 12:11:55 -05:00
Dannon Baker
b8b0e44122
Strip whitespace
2015-11-20 12:11:01 -05:00
carlfeberhard