Nicola Soranzo
e975ca3754
Update to black 2024 stable style
2024-01-30 18:09:51 +00:00
John Davis
475f7227c4
Add future=True flag to SA engine
2023-12-12 09:54:08 -05:00
John Davis
fc0a266bdb
Merge pull request #16932 from jdavcs/dev_sa20_fix21
...
SQLAlchemy 2.0 upgrades (part 5)
2023-11-29 09:55:24 -05:00
John Davis
fa5adb0f52
SA2.0: Do not bind MetaData: must use engine explicitly
2023-11-27 18:30:16 -05:00
Michael R. Crusoe
df807e6d17
Use the walrus := operator!
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Fixed by running:
```
ack --type=python -f | grep -v '^lib/galaxy/schema/bco/\|^lib/galaxy/schema/drs/\|^tools/\|^.venv/\|^.tox/' | grep -v '^lib/galaxy/files/sources/\|^lib/galaxy/job_metrics/\|^lib/galaxy/objectstore/\|^lib/galaxy/tool_util/\|^lib/galaxy/util/' | xargs auto-walrus
make format
```
Note that the directories for the packages listed in
`packages/packages_for_pulsar_by_dep_dag.txt`
were explictly excluded.
2023-11-26 18:34:10 +00:00
Sergey Golitsynskiy
ee5a3450bb
Update db index testing: test both models, gxy and tsi
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Also, remove unused env var
2022-03-09 18:41:03 -05:00
Dannon Baker
623a5e165a
Apply black formatting.
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Apply isort.
2022-02-03 07:42:20 -05:00
Nicola Soranzo
90a729e431
New pyupgrade fixes
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Found by running `ack --type=python -f | grep -v '^tools/' | xargs pyupgrade --py36-plus`
2021-10-24 12:10:34 +01:00
Sergey Golitsynskiy
3cd1c7f1c7
Handle DedupedColumnCollection in db_indexes
...
This should fix the `scripts/check_model.py` script and the database
indexes github workflow.
Accessing index columns has changed: index.columns gives access to a
DedupedColumnCollection instead of a ColumnCollection.
Columns can be accessed by key; keys are accessed via keys() attr.
Ref:
https://docs.sqlalchemy.org/en/14/changelog/migration_14.html#select-objects-and-derived-from-clauses-allow-for-duplicate-columns-and-column-labels
https://docs.sqlalchemy.org/en/14/core/sqlelement.html?highlight=dedupecolumncollection#sqlalchemy.sql.expression.ColumnCollection
2021-05-18 19:00:55 -04:00
Sergey Golitsynskiy and Marius van den Beek
574fa4cb1f
Let get_config() handle env override
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Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com >
2020-10-04 23:25:23 -04:00
Sergey Golitsynskiy
f27b4e50f6
Add github workflow; env var to override db uri
2020-10-03 02:26:40 -04:00
Sergey Golitsynskiy
20c7cdb2cb
Rename missing_index > index_tuple
2020-10-03 02:26:40 -04:00
Sergey Golitsynskiy and Nicola Soranzo
b9093e33da
Update scripts/check_model.py
...
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2020-10-03 02:26:40 -04:00
Sergey Golitsynskiy and Nicola Soranzo
7719f53bca
Update scripts/check_model.py
...
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2020-10-03 02:26:40 -04:00
Sergey Golitsynskiy
2dbfdce295
Add script + wrapper
2020-10-03 02:26:40 -04:00
Nicola Soranzo