mvdbeek
d0414eee5b
Adjust unit tests for new setup
2021-04-13 10:13:42 +02:00
Nicola Soranzo
d9188a4c3e
Merge pull request #11111 from bernt-matthias/topic/cheetah-qualified
2021-04-08 02:40:06 +01:00
Nicola Soranzo
7d32450ba8
Merge pull request #11727 from bernt-matthias/topic/lint-checkboxes
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lint for checkboxes select
2021-04-07 23:19:18 +01:00
M Bernt and Nicola Soranzo
24ec1d603f
Update test/unit/tool_util/test_tool_linters.py
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2021-04-07 22:23:53 +02:00
M Bernt and Nicola Soranzo
47b6780fb9
fix typo
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2021-04-07 19:38:25 +02:00
Matthias Bernt
5034d6dd62
test qualified and unqualified access
2021-04-07 17:39:48 +02:00
John Chilton
66c1132ec0
Merge pull request #11307 from bernt-matthias/topic/recurse-dirs
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ignore subdirectories if recurse is false
2021-04-07 10:06:52 -04:00
M Bernt
08fbff5844
tests for multiple value splitter
2021-04-06 18:32:19 +02:00
John Chilton
7773814c06
Merge pull request #11769 from davelopez/support_permissions_in_files_sources
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Support role and group permissions in file sources plugins
2021-04-06 11:14:20 -04:00
Marius van den Beek
32cb259274
Merge pull request #11641 from natefoo/release-process-overhaul
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Overhaul make-based release process
2021-04-06 16:45:12 +02:00
davelopez
e71b92a9f8
Add more tests for invalid expressions
2021-04-06 11:17:55 +02:00
davelopez
f8ace37cb4
Add expression validation when the configuration is parsed.
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This will stop Galaxy from starting with an invalid expression defined in the configuration.
2021-04-06 11:17:55 +02:00
davelopez
847db78aa1
Add test for using expression rules in posix file source
2021-04-06 11:17:55 +02:00
davelopez
03795b766e
Add generic boolean expression evaluator + unit tests
2021-04-06 11:17:55 +02:00
davelopez
895c165414
Fix integration test failing by different response order
2021-04-06 11:17:55 +02:00
davelopez
6ef54d73c6
Add file sources access unit tests
2021-04-06 11:17:55 +02:00
davelopez
74ca28c3a8
Change requirement condition to both options.
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If the `requires_roles` and `requires_groups` options are defined, both must be satisfied.
2021-04-06 11:17:55 +02:00
davelopez
ed0af1aef1
Update integration tests
2021-04-06 11:17:55 +02:00
davelopez
7f23534461
Add integration tests.
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Basic tests for the new `requires_roles` and `requires_groups` settings for FileSources using the posix plugin.
2021-04-06 11:17:55 +02:00
Sergey Golitsynskiy
179a6e4a17
Fix deprecated db urls in user config properties
2021-04-05 17:11:24 -04:00
Sergey Golitsynskiy
be4429e4fb
Replace: s/postgres/posgresql in db URLs
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Was deprecated in SQLAlchemy 1.3, removed in SQLAlchemy 1.4
https://docs.sqlalchemy.org/en/14/changelog/changelog_14.html#change-3687655465c25a39b968b4f5f6e9170b
https://github.com/sqlalchemy/sqlalchemy/issues/4643
2021-04-05 15:02:26 -04:00
Nicola Soranzo
20a4bcd519
Use assertRaisesRegex() to fix new B017 linting errors
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Fix the following errors reported by flake8-bugbear 21.4.3:
B017 assertRaises(Exception): should be considered evil. It can lead to
your test passing even if the code being tested is never executed due to a
typo. Either assert for a more specific exception (builtin or custom), use
assertRaisesRegex, or use the context manager form of assertRaises.
2021-04-03 20:09:02 +01:00
Marius van den Beek
0733ba3ddb
Merge pull request #10222 from ic4f/dev_state5
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Store job_id on Dataset table.
2021-04-02 13:29:47 +02:00
Sergey Golitsynskiy
349c0502ab
Add unit test for testing dataset/job relationship
2021-04-01 17:18:44 -04:00
mvdbeek
aa6e1dcc05
Merge branch 'release_21.01' into dev
2021-04-01 16:52:11 +02:00
John Chilton
a6f3b255cb
Merge pull request #11764 from mvdbeek/fix_format_input_implicit_conversion
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[21.01] Fix format="input" with implicit conversions
2021-04-01 10:45:55 -04:00
almahmoud
619f1e7a11
galaxy.webapps.tool_shed to webapp.tool_shed
2021-03-31 17:37:36 -04:00
mvdbeek
7eb853d703
Fix format="input" with implicit conversions
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where the implicit converter uses galaxy.json.
Add test, fix fix
2021-03-31 22:06:39 +02:00
Anthony Bretaudeau
b5e2ea9877
try something else
2021-03-31 13:42:17 +02:00
mvdbeek
c8c08ca84c
Merge branch 'release_21.01' into dev
2021-03-31 12:09:44 +02:00
Anthony Bretaudeau
b9c6fc6b23
debug unending ci
2021-03-31 12:09:15 +02:00
Sergey Golitsynskiy
f97f3f58ca
Revise test
2021-03-30 19:07:41 +02:00
Sergey Golitsynskiy
e9748822fe
Simplify test for degugging
2021-03-30 19:07:41 +02:00
Sergey Golitsynskiy
19617a342f
Attempt to fix integration test
2021-03-30 19:07:41 +02:00
Sergey Golitsynskiy
b361231314
Store job_id for discovered datasets; enable test
2021-03-30 19:07:41 +02:00
Sergey Golitsynskiy
f76a0153a5
Fix lint error
2021-03-30 19:07:41 +02:00
Sergey Golitsynskiy
0305428cd7
Add integration test verifying job_id
2021-03-30 19:07:41 +02:00
Nate Coraor
cc1f471490
Release process overhaul
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- Convert release Makefile targets to a script
- Update package versions from Galaxy version instead of leaving them
uncoupled
- Use next-dev-version process on release branches when in between point
releases
- Automatically detect and increment versions
- Test merging release branches forward before pushing releases
- Support multiple rc versions (will be more useful for package testing)
- Support building local versions of packages
- Tests for the release script
2021-03-30 12:11:48 -04:00
Dannon Baker
857171e787
Globally swap MininmalManagerApp to MinimalManagerApp (thanks for
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noticing the first one @nsoranzo -- I am surprised how many of these
were in here)
2021-03-29 09:29:25 -04:00
mvdbeek
1afe1e1211
Break UniverseApplication into smaller parts
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so we can use a variant of app that loads managers in Celery.
2021-03-29 09:29:25 -04:00
mvdbeek
f1debeacc9
Add purge dataset task
2021-03-29 09:29:25 -04:00
Anthony Bretaudeau
4adeca0e86
Merge remote-tracking branch 'upstream/release_21.01' into pulsar_tool_dir
2021-03-25 16:53:34 +01:00
Anthony Bretaudeau
b5ad804b64
lint
2021-03-25 14:08:14 +01:00
Anthony Bretaudeau
340caa1174
add more tests
2021-03-25 14:01:17 +01:00
M Bernt and Nicola Soranzo
9c01844a45
Apply suggestions from code review
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2021-03-25 11:53:33 +01:00
Matthias Bernt
9e92503a15
add test
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and reformat
2021-03-25 11:24:53 +01:00
mvdbeek
ac3fcf911e
Merge branch 'release_21.01' into dev
2021-03-24 20:34:06 +01:00
Sergey Golitsynskiy
bb9547a1a3
Merge pull request #11696 from ic4f/dev_no_sqlalchemy_utils
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Replace sqlalchemy-utilities with local implementation
2021-03-24 10:36:46 -04:00
Sergey Golitsynskiy
57782d5ff6
Add MySQL functionality, tests; refactor
2021-03-24 02:02:49 -04:00
Sergey Golitsynskiy
49ca9358bc
Add view tests, refactor
2021-03-23 23:23:45 -04:00
mvdbeek