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Code Issues Packages Projects Releases Wiki Activity
6,206 Commits 69 Branches 243 Tags
cefa76b491ccd96e4d7c433eaddf23489c0651eb
Commit Graph
540 Commits
Author SHA1 Message Date
Jeremy Goecks cefa76b491 Trackster: (a) give every Drawable unique id and (b) remove unused reference to jquery.scrollTo. 2011-11-02 17:48:22 -04:00
Jeremy Goecks b6d64f6a52 Fix vertical scrolling via keyboard in Trackster. 2011-11-01 17:51:53 -04:00
Jeremy Goecks 0fddc97e94 Trackster: (a) refactor tool data functionality into TiledTrack class so that it is generally available; (b) enable VcfTracks to work with tools; and (c) more robust parameter setting. Enable Unified Genotyper to work with Trackster. 2011-11-01 10:49:34 -04:00
Jeremy Goecks 1519abb0c6 Enhance Trackster VCF support: (a) use ReadPainter rather than VariantPainter and (b) provide support for insertions and deletions. Pack scripts. 2011-10-31 15:31:59 -04:00
Jeremy Goecks 7a1ad5f967 Trackster: automatically remove spaces from an entered location. 2011-10-25 14:59:19 -04:00
Jeremy Goecks 2a54228735 Trackster: refactor constructor code for cleaner initialization. 2011-10-24 20:28:28 -04:00
Jeremy Goecks 9bcaef6c9f Trackster: set new track color randomly using W3C metrics. 2011-10-24 17:47:50 -04:00
Jeremy Goecks 7800c6fe1c Trackster: make overview its own track, add icons for showing/hiding overview, and make track header optional. 2011-10-23 16:32:04 -04:00
Jeremy Goecks b57d60caf2 Trackster: fix bug in drawing reference track. 2011-10-23 11:13:40 -04:00
Jeremy Goecks f1fdbf7b4d Trackster: replace menus with icons + tooltips. Overview is not yet implemented. 2011-10-21 20:00:27 -04:00
Jeremy Goecks a7fba00f21 Bug fixes to Trackster ReferenceDataManager. 2011-10-18 10:50:16 -04:00
Jeremy Goecks 1e2ae076d6 Better handling of reference data in Trackster read tracks. 2011-10-17 19:57:54 -04:00
Jeremy Goecks a2eb4594c8 Fix Trackster bug that prevented differences from being displayed in mapped reads. 2011-10-17 16:03:47 -04:00
Jeremy Goecks 15861f9d7a Improvements to Trackster filters: (a) scaler framework replaces generator framework; (b) addition of height scaler to set feature height based on attributes; and (c) no transparency for feature labels. 2011-10-17 15:50:10 -04:00
Jeremy Goecks a053ecac57 Trackster: refactoring to remove (a) references to view.tracks because view can hold any drawable option and (b) track ids because they are no longer used. 2011-10-11 14:47:34 -04:00
Jeremy Goecks 879e25886c Trackster: no need to parse floats because data providers now return floats rather than strings. 2011-10-11 14:14:06 -04:00
Jeremy Goecks 31569d2396 Trackster: in pack mode for feature tracks, show feature details on mouseover. Also: (a) provide general method for rounding numbers; (b) return numerical filter values as floats rather than strings; and (c) pack scripts. 2011-10-11 14:05:08 -04:00
Jeremy Goecks 7efc30c01e Bug fixes: (a) trackster: don't cache tile if undefined and (b) define init_operation_buttons differently to prevent ordering issue. Pack scripts. 2011-10-07 15:24:27 -04:00
Jeremy Goecks 8f6c6bad42 Trackster: return drawing coordinates for all features. Pack scripts. 2011-10-06 09:34:51 -04:00
Jeremy Goecks 362026e64e Trackster: add feature-position mapper so that a feature's data can be recovered using from screen position. This is the foundation for providing feature data on mouseover and/or click. 2011-10-04 15:56:21 -04:00
Jeremy Goecks f0d0c46f56 Trackster: fix display of reference data. 2011-10-03 13:34:32 -04:00
Jeremy Goecks 8020926e8e Trackster: fixes for adding a dataset to a new visualization. 2011-09-30 14:21:51 -04:00
Jeremy Goecks 86dc44ea34 Trackster improvements: (a) groups now have menus and can be renamed and deleted; (b) mode is again saved and restored; (c) tracks can be added directly to groups rather than only the view; running a tool inside trackster creates its own group and places new tracks in group. 2011-09-30 09:26:22 -04:00
Jeremy Goecks ae03419afc Trackster: (a) enable renaming and removing of groups and (b) more refactoring to enable groups to have preferences. Pack scripts. 2011-09-28 10:47:54 -04:00
Jeremy Goecks 7e3e34ba8b Trackster: use jQuery Deferred objects rather than callbacks for cleaner initialization of saved visualizations. This prevents intermittent 'no data for this chrom/contig' message from appearing incorrectly. 2011-09-27 13:06:34 -04:00
Jeremy Goecks c2b90facc7 Trackster: rename TrackConfig to DrawableConfig and provide every Drawable object with a config. 2011-09-26 10:23:15 -04:00
Jeremy Goecks 54542ad9d6 Trackster: (1) save and restore track groups; (2) support nested groups; (3) make View a DrawableCollection. 2011-09-24 10:45:34 -04:00
Jeremy Goecks c1055e4ae8 Trackster: put in framework to manage track collections. 2011-09-23 13:26:34 -04:00
Jeremy Goecks 5b3561444d Enable Trackster to use and display custom build data and update datatypes_conf sample to include converters for custom build datasets. 2011-09-21 11:11:08 -04:00
Jeremy Goecks 2380d990e2 Trackster: (a) remove child tracks, which are replaced with track groups and (b) preserve and restore track ordering, which was broken in 732ad7ebde0c. 2011-09-19 16:07:53 -04:00
James Taylor c61e65a051 Pack trackster script 2011-09-19 07:22:23 -04:00
Jeremy Goecks 17f582002c Trackster: do not use child tracks for now because they do not work with new request_redraw structure. 2011-09-19 00:07:24 -04:00
Jeremy Goecks 3de23a6592 Trackster: improve method for fetching additional data and simply data fetching. 2011-09-13 16:55:17 -04:00
Jeremy Goecks fa2c21f104 Fix trackster bug in determining tile bounds and in documentation. 2011-09-12 14:51:26 -04:00
Jeremy Goecks 81ceb94f10 Trackster: properly remove tracks from view's track array. 2011-09-02 18:00:16 -04:00
Jeremy Goecks f85b368f48 Trackster: fix bug in computing tile_high and refactor tile bounds computation into own method. 2011-09-02 14:08:53 -04:00
Jeremy Goecks 63191b8b83 Trackster: enable track renaming through config dialog. 2011-09-01 14:01:00 -04:00
Jeremy Goecks 7b529377fe Fix Trackster dragging/moving bugs. 2011-09-01 12:13:45 -04:00
Jeremy Goecks 5017b7fe5d Trackster: add mode parameter to draw_tile and use to support better overview drawing. 2011-08-31 11:44:52 -04:00
Jeremy Goecks 59ccdd10a3 Trackster: add left_offset attribute to LineTrack so that line tracks can be set in overview. 2011-08-28 14:07:33 -04:00
Jeremy Goecks 1dad07620c Trackster: introduce collections of tracks. Track 'groups' can be created and tracks can be added or removed from groups. Currently groups do not have a dropdown menu and cannot be saved. 2011-08-26 17:45:50 -04:00
Jeremy Goecks 651eb1f2ee Trackster: treat numbers as floats when dynamically filtering. Pack scripts. 2011-08-25 11:37:07 -04:00
Jeremy Goecks a360a335c7 Trackster: create a set of shared functions for managing the user interface and use functions in both visualization editor and display. 2011-08-25 11:28:01 -04:00
Jeremy Goecks e81c4ef6a8 Pack scripts. 2011-08-24 14:42:56 -04:00
Jeremy Goecks 9985d54d98 Trackster: route track drawing through requestAnimationFrame framework. 2011-08-24 10:19:38 -04:00
Jeremy Goecks d073792e38 Trackster: remove throttling during dynamic filtering because it's not needed with requestAnimationFrame. 2011-08-23 17:27:58 -04:00
Jeremy Goecks 174e8d3c48 Trackster: make it possible to set features' transparency based on attribute values. 2011-08-23 17:21:37 -04:00
James Taylor 8f35ed245f Automated merge with https://bitbucket.org/galaxy/galaxy-central 2011-08-11 18:37:14 -04:00
James Taylor 2c7b73b7c1 remove delayed draw and replace with synchronized drawing through requestAnimationFrame (or a fallback) 2011-08-11 18:36:51 -04:00
Jeremy Goecks 5b4d3b10ba Documentation and white space fixes for Trackster. 2011-08-11 14:33:15 -04:00