Martin Cech
c9b0379230
Merge pull request #6846 from thobalose/docs
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Updated GIE docs
2018-10-10 13:15:15 -04:00
thobalose
2cacb69d97
en-US spelling
2018-10-10 17:56:03 +02:00
thobalose
3b3215138f
Updated GIE build docs.
2018-10-10 15:06:32 +02:00
thobalose
292197386b
Added NVM to manage multiple node versions.
2018-10-10 15:06:32 +02:00
thobalose
848196732d
Updating GIE build docs.
2018-10-10 15:06:07 +02:00
Nicola Soranzo
afa7299705
Merge branch 'release_18.09' into dev
2018-10-10 10:11:13 +01:00
Nicola Soranzo
9b6833b5a0
make config-rebuild
2018-10-08 11:03:46 +01:00
Nicola Soranzo
c83c5cb784
Change conda channel priority: conda-forge > bioconda
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xref. https://github.com/bioconda/bioconda-utils/issues/330
2018-10-08 11:02:23 +01:00
pvanheus
a5d794dc4d
Add docs about running jobs in containers
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Explain how jobs can be run in containers (something currently documented in the `job_conf.xml.sample_advanced` file)
2018-10-05 15:49:47 +02:00
Nicola Soranzo
64bb339a31
Merge pull request #6641 from martenson/rename-and-document-config-value
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document config for sniffing compressed files, enable by default
2018-09-08 00:32:08 +01:00
Nicola Soranzo
59c1ed2266
Various doc fixes
2018-09-03 14:34:13 +01:00
Nicola Soranzo
ad02c53154
Fix many links
2018-09-03 14:34:13 +01:00
Nicola Soranzo
77706a8e62
Update application documentation
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With
```
make -C doc/ updaterst
```
2018-09-03 11:25:42 +01:00
Martin Cech
b34414adc8
switch the default to sniff compressed datatypes
2018-08-28 13:38:44 -04:00
Martin Cech
e0d1208834
document the sniff_compressed_dynamic_datatypes_default config and include in sample
2018-08-28 10:09:27 -04:00
Nicola Soranzo
f5bd245faa
Merge branch 'release_18.05' into dev
2018-08-17 16:39:29 +01:00
Matthew Spelchak
6cbb574553
Fix Location of Plugin Static Content
2018-08-14 13:15:39 -05:00
Enis Afgan
4f3cd889f1
Typo and wording fixes for dependency resolvers docs
2018-08-07 19:13:29 -04:00
Dannon Baker
c9d17545d8
Config rebuild, and a few typos.
2018-08-06 10:01:20 -04:00
Nicola Soranzo
6e02c9aff7
Merge branch 'release_18.05' into dev
2018-06-17 13:11:47 +01:00
Nicola Soranzo
e8beea0d60
Merge branch 'release_18.01' into release_18.05
2018-06-17 12:05:50 +01:00
mvdbeek
9ac0161891
Update description for installing pbs-python
2018-06-15 18:11:50 +02:00
Nicola Soranzo
d66a63012a
Replace unmaintained pycrypto dependency with pycryptodome
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Minimum secret key length for Blowfish was increased from 4 to 5 bytes.
First argument to Blowfish.new() must be a bytestring, and the `mode`
argument is no more optional.
Remove unused `encode_id` function from `scripts/api/common.py` .
Documentation updated, then rebuilt with `make config-rebuild` .
2018-06-13 03:07:04 +01:00
Dannon
9cf66df7a7
Merge pull request #6171 from nsoranzo/pr_approval
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[PROCEDURES] Clarify how +1 votes on PRs can be expressed v.3
2018-06-01 16:45:45 -04:00
Dannon
5ba71f580f
Merge pull request #6215 from natefoo/dynamic-rule-dynamic-reload
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Enable automatic reload of dynamic job rules on change
2018-06-01 11:38:24 -04:00
Katrin Leinweber
f99f8667bc
Hyperlink DOIs against preferred resolver
2018-05-30 16:49:21 +01:00
Dannon Baker
2ac83d74fb
Merge remote-tracking branch 'upstream/release_18.05' into dev
2018-05-24 15:09:35 -04:00
Nate Coraor
30b5e50ba0
Enable dynamic reload of dynamic job rules when configured, using
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watchdog notifications.
2018-05-24 13:19:01 -04:00
Martin Cech
5b57dc0661
this is not the md you are looking for
2018-05-24 11:38:54 -04:00
Martin Cech
134360afce
add example
2018-05-24 11:38:08 -04:00
Martin Cech
00ec90d038
document removed packed symlink
2018-05-24 11:07:38 -04:00
Nate Coraor
2ab75d861b
Merge remote-tracking branch 'origin/release_18.05' into dev
2018-05-23 14:31:09 -04:00
Martin Cech
72d07e07d5
remove mention of 18.09, that is only for dev
2018-05-23 12:00:31 -04:00
Martin Cech
2cf1c00137
Merge branch 'release_18.05' into dev
2018-05-22 22:11:02 -04:00
Nate Coraor
cfaf7186bd
Support building and publishing pre-release docs
2018-05-22 16:31:37 -04:00
Nicola Soranzo
41e12f0b9d
Merge branch 'release_18.05' into dev
2018-05-18 10:43:15 +01:00
Nicola Soranzo
73fb6785fd
Clarify how +1 votes on PRs can be expressed
2018-05-18 09:45:48 +01:00
Nicola Soranzo
4c4aa11ad4
Update @erasche's name
2018-05-18 09:45:48 +01:00
Martin Cech
fe37996de3
rename the config option to enable_gdpr_beta
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to reflect the information that we do not guarantee compliance
2018-05-16 12:38:46 -05:00
Martin Cech
206daec262
Merge pull request #6006 from jmchilton/release_18.05_release_notes
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[18.05] Release notes for 18.05.
2018-05-16 12:13:20 -05:00
Nicola Soranzo
c3f9e0c2a7
Merge branch 'release_18.05' into dev
2018-05-16 11:41:22 +01:00
Nicola Soranzo
82dce758f1
Small fixes
2018-05-16 11:20:33 +01:00
Nicola Soranzo
04d1536edf
Fix typos
2018-05-16 10:17:34 +01:00
Martin Cech
c4f74c19f3
add more breaking changes
2018-05-15 22:32:43 -05:00
Martin Cech
d70aadd6d1
add minor tinies
2018-05-15 22:20:36 -05:00
Martin Cech
77e187ddd1
match styling with older RN
2018-05-15 22:17:23 -05:00
Martin Cech
5d6249ec6f
add security and breaking changes to release notes
2018-05-15 22:10:30 -05:00
Martin Cech
63d4ea900b
add most important PRs added
2018-05-15 21:54:49 -05:00
Martin Cech
3a9a46f772
Merge pull request #6069 from erasche/gdpr
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[18.05] GDPR Compliance Mode
2018-05-15 20:40:20 -05:00
Martin Cech
f8bfb82169
fix what 🦅 👀 spotted
2018-05-15 20:23:37 -05:00
Martin Cech