Nicola Soranzo
79c6880c6b
Remove unused Docker Swarm options
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Follow-up on https://github.com/galaxyproject/galaxy/pull/3863 .
2019-09-22 22:52:05 +01:00
selten
7afd9b403e
Add note that Tool Shed datatypes are deprecated
2019-08-28 21:34:35 +02:00
Peter Selten
73417c5af5
Add futher information and chane some naming and comments
2019-08-28 19:58:32 +02:00
selten and Nicola Soranzo
385752bf2c
Update doc/source/dev/data_types.md
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Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com >
2019-08-28 19:26:57 +02:00
selten and Nicola Soranzo
69f72079a9
Update doc/source/dev/data_types.md
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Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com >
2019-08-28 19:26:18 +02:00
selten and Nicola Soranzo
323fcbe13d
Update doc/source/dev/data_types.md
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Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com >
2019-08-28 19:25:59 +02:00
selten and Nicola Soranzo
c76865081c
Update doc/source/dev/data_types.md
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Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com >
2019-08-28 19:25:44 +02:00
selten and Nicola Soranzo
95109fb902
Update doc/source/dev/data_types.md
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Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com >
2019-08-28 19:25:23 +02:00
selten and Nicola Soranzo
857d40ba12
Update doc/source/dev/data_types.md
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Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com >
2019-08-28 19:24:55 +02:00
selten and Nicola Soranzo
00bd2e775f
Update doc/source/dev/data_types.md
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Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com >
2019-08-28 19:24:36 +02:00
selten and Nicola Soranzo
ea0b4002cd
Update doc/source/dev/data_types.md
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Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com >
2019-08-28 19:23:59 +02:00
selten and Nicola Soranzo
49e10f7672
Update doc/source/dev/data_types.md
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Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com >
2019-08-28 19:23:48 +02:00
selten and Nicola Soranzo
9941f0eb4d
Update doc/source/dev/data_types.md
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Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com >
2019-08-28 19:23:37 +02:00
selten and Nicola Soranzo
1af5f476ee
Update doc/source/dev/data_types.md
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Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com >
2019-08-28 19:23:27 +02:00
selten and Nicola Soranzo
66e6f1bfd1
Update doc/source/dev/data_types.md
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Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com >
2019-08-28 19:23:18 +02:00
selten and Nicola Soranzo
d5063d68a0
Update doc/source/dev/data_types.md
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Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com >
2019-08-28 19:23:07 +02:00
selten and Nicola Soranzo
4cd64768ac
Update doc/source/dev/data_types.md
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Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com >
2019-08-28 19:22:58 +02:00
selten and Nicola Soranzo
c9ea566221
Update doc/source/dev/data_types.md
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Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com >
2019-08-28 19:22:46 +02:00
selten and Nicola Soranzo
5c627909d0
Update doc/source/dev/data_types.md
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Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com >
2019-08-28 19:22:20 +02:00
selten
8610fa8cab
Merge branch 'dev' of https://github.com/galaxyproject/galaxy into docs-data-types
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# Conflicts:
# doc/source/dev/index.rst
2019-08-28 16:27:53 +02:00
selten
94c57ace95
Update index.rst
2019-08-28 16:19:49 +02:00
selten
fdb0d8721b
Create data_types.md
2019-08-28 16:18:55 +02:00
selten
4d325460b0
Change 'ToolShed' to 'Tool Shed'
2019-08-24 12:14:21 +02:00
Peter Selten
53ad227750
Fix documentation more, spread data managers documentation over multiple lines so it's easier to read when editing.
2019-08-24 11:56:47 +02:00
selten
333950ec46
Update faq.rst
2019-08-23 21:28:03 +02:00
selten
9dc36d36c5
Update build runner documentation
2019-08-23 21:23:32 +02:00
selten
7448a11c39
Small changes to the data managers docs
2019-08-23 21:04:50 +02:00
selten
f34b29fca3
Update documentation for clarity on docs.galaxyproject.org
2019-08-23 09:49:17 +02:00
Peter Selten
bf0cc5cd28
Migrate documentation to docs website for data managers
2019-06-28 22:12:09 +02:00
selten
b2cfb961f2
Add remove operation to data managers and document data managers in regular Galaxy docs.
2019-06-28 20:02:37 +02:00
Dannon Baker
a9b1a0454d
Update documentation for IES
2019-05-08 11:59:16 -04:00
Dannon Baker
fd75ce5e43
Standardize (at least a step forward) access to IES lib via bundle
2019-05-08 10:59:34 -04:00
Dannon Baker
38c2a80904
Update IES to use bundleEntries-based JS entrypoint to avoid having to ship an extra file; incremental step towards removing require here, too.
2019-05-07 16:44:15 -04:00
Nicola Soranzo
46b3539a35
Fix doc bugs
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Use proper cross-referencing with `:doc:`.
2019-01-14 22:45:34 +00:00
Sergey Golitsynskiy
0bd861aec7
Code style improvement to previous commit
2018-12-21 13:23:41 -05:00
Sergey Golitsynskiy
5d8e0bb049
Correct code error in 'build job runner' tutorial
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When __init__ is called, **kwargs (most likely) will not contain
the 'runner_param_specs' key. And if so, calling update() on
kwargs['runner_param_specs'] will cause an error. Check if key exists,
then update or create.
2018-12-21 12:42:25 -05:00
Dannon Baker
db67cd2f56
Merge remote-tracking branch 'upstream/dev' into webpack_4_minimal_flat
2018-10-15 14:51:41 -04:00
Nicola Soranzo
91a3954307
Index `finding_and_improving_slow_code` page in dev docs
2018-10-12 09:57:46 +01:00
Dannon Baker
f116cb8de8
Drop more grunt cruft
2018-10-11 11:35:26 -04:00
thobalose
3b3215138f
Updated GIE build docs.
2018-10-10 15:06:32 +02:00
thobalose
848196732d
Updating GIE build docs.
2018-10-10 15:06:07 +02:00
mvdbeek
2e5bbad353
Clarify the last section
2017-09-03 19:47:29 +02:00
mvdbeek
634f7dcd39
Add a small howto on profiling galaxy code
2017-09-03 19:38:56 +02:00
E Rasche
2f992d90ae
Rebase
2017-06-01 16:43:21 +00:00
Martin Cech
66a02b6af1
modify our docs in preparation for restructuring
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start moving admin content from old wiki
2017-03-10 12:06:24 -05:00
Nicola Soranzo
96678f57cc
More IPython to Jupyter changes
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Follow-up on #3294 .
2016-12-19 12:16:42 +00:00
Anne Fouilloux
93da60c48e
Changed ipython with jupyter
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not only for converting jupyter notebook to HTML (with nbconvert) but also
where ipython/IPython was referenced.
Some files still contain ipython but this is mostly related to documentation or
to the IE docker container itself.
2016-12-12 14:26:58 +01:00
Nicola Soranzo
3180b63166
Properly integrate tool XML schema with docs
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Generate intermediate rst file instead of html
Move generation to doc/Makefile
Use pandoc to generate table of contents and fragment ids.
Remove nested inline markup (not supported by reStructuredText)
Fix https and other links.
2016-10-24 19:42:19 +01:00
Nicola Soranzo
e6d0b69ec8
Add and use local images for build runner doc
2016-10-24 19:40:42 +01:00
Nicola Soranzo
a21ed34efb
Move png in the right directory
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Broken in #2543 .
2016-10-24 19:40:41 +01:00
Nicola Soranzo