 Greg Von Kuster
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7e21fb74a3
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Fixes for Biomart and UCSC to better ensure the data type is correctly set. A data type of "tabular" is now the default, and data will be sniffed if this is the data type.
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2009-01-21 17:03:39 -05:00 |
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Greg Von Kuster
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32b4b77f74
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Missed translating the primaryTable data type from UCSC in my last commit.
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2008-11-13 15:17:42 -05:00 |
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Greg Von Kuster
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c454370ff7
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Add a new <data_type_translation> tag set to data_source tools that enable the translation of an unsupported data type to a supported one in Galaxy ( currently only used in UCSC ). Also some tweaks to the jobs reports.
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2008-11-13 14:56:33 -05:00 |
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Greg Von Kuster
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b74f176613
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Add a new URL_method attribute to data_source tool types whose value is either "get" or "post" ( some require a get request while others require a post request ). This fixes the Biomart problem ( along with a new, well documented hack that can be eliminated when Biomart encodes the value of URL in the initial response - they'll tell us when they've fixed this ). Also added some requested info to the "send to EpiGRAPH" tool.
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2008-10-27 16:03:43 -04:00 |
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Greg Von Kuster
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288912ee87
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Fixes for data_source tools, data.name, data.info, data.dbkey, and data.extension should now be properly set. Eliminated fastq data type from datatypes_conf.xml.sample since it is not a supported data type.
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2008-10-17 10:46:29 -04:00 |
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Greg Von Kuster
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b3b6c54247
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Use only 1 underlying executable ( data_source.py ) for data source tools. A new tag set is added to the data source tool configs to handle tranlsation of request param names sent by remote apps ( something like <param_trans galaxy_name="dbkey" remote_name="GENOME" missing="?" /> ).
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2008-10-07 15:21:46 -04:00 |
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Greg Von Kuster
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04e0834500
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Revert 2715.
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2008-06-04 13:02:15 +00:00 |
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Greg Von Kuster
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dedc7278a1
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Requires config change, temporary files are now created in a configurable location - affects many tools.
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2008-06-03 20:29:54 +00:00 |
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Greg Von Kuster
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af3b0669aa
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Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.
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2008-03-28 15:24:50 +00:00 |
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James Taylor
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6aa6c5a2d8
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More width hints for data source tools.
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2007-07-05 19:20:33 +00:00 |
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Daniel Blankenberg
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ad8719b852
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Fix ucsc test browser.
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2007-03-21 19:59:58 +00:00 |
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Daniel Blankenberg
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8a207dcd87
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Update UCSC direct connection to use main ucsc site. Add direct test
connection.
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2007-03-21 19:52:01 +00:00 |
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