Jeremy Goecks
d2a96e66bd
Merged in Tomithy/galaxy-central-phyloviz-2 (pull request #65 )
2012-08-27 14:08:55 -04:00
Enis Afgan
a2857345f3
style: explicitly define a color for the masthead highlight (i.e., gradient top)
2012-08-27 10:57:31 +10:00
Tomithy Too
516d727229
re-integrated phyloviz to a new fork of galaxy-central with a tat of minor touch up; save and edit now works
2012-08-26 18:22:23 +08:00
Jeremy Goecks
2b561bccfb
Trackster: for feature tracks, only draw name if available.
2012-08-23 13:56:34 -04:00
Jeremy Goecks
2a4012e03d
Final JS reorg to rename and move files so that all files follow standard conventions.
2012-08-21 17:08:35 -04:00
Jeremy Goecks
66d1892364
More JS file reorganization: (a) move IE and rgenetics into their own directories; (b) move additional external libraries to libs.
2012-08-21 16:54:19 -04:00
Jeremy Goecks
44d37d7eee
Move most jQuery files into own libs directory.
2012-08-21 15:52:50 -04:00
Jeremy Goecks
a3d8452df5
JavaScript cleanup: (a) create backbone lib in scripts/lib and use for backbone libraries; (b) clean up history.js; (c) pack scripts.
2012-08-21 14:27:18 -04:00
Jeremy Goecks
871f72c956
Trackster: for explicit coverage histogram mode in Feature Tracks, use coverage indices rather than computing on client side.
2012-08-19 15:42:11 -04:00
Carl Eberhard
b2a5996a6c
tool-data change to fix bwa_wrapper.test_tool_000001; backbone history.js start
2012-08-14 13:15:48 -04:00
Jeremy Goecks
bcc9a3b73d
Update track icons when decomposing a composite track into individual tracks.
2012-08-07 09:52:14 -04:00
Jeremy Goecks
29037352df
Trackster and data providers: fix and document one-off/coordinate systems used for different track types.
2012-08-03 11:20:43 -04:00
Carl Eberhard
6337e6565b
fixes for tool search clear-btn (to use templating); added bootstrap.js to tool menu iframe
2012-08-02 16:43:59 -04:00
Carl Eberhard
62b0725513
btn/esc to clear tool search (bb issue #774 )
2012-08-02 12:21:49 -04:00
Jeremy Goecks
72921fcad3
Trackster bug fixes: (a) fix 1-base offset bug in LineTracks; (b) fix overview track resolution calculation; and (c) code cleanup via JSHint.
2012-07-31 11:55:41 -04:00
James Taylor
a6e8a66317
tooltips: use a special even to remove tooltips automatically when their element is deleted. fix the bug deleting datasets from this history.
2012-07-25 17:08:38 -04:00
Jeremy Goecks
97ffa48a2b
Add bigwig/bigbed support to Circster. Pack scripts.
2012-07-24 14:28:08 -04:00
Jeremy Goecks
15e2cc247d
Rename paramamonster as sweepster and use bootstrap tooltips in sweepster.
2012-07-24 14:21:40 -04:00
Jeremy Goecks
134a5ad252
Trackster: only draw connector when both mates of a read are drawn; this prevents spurious connectors from being drawn but prevents connectors from being drawn across tile boundaries.
2012-07-24 14:07:06 -04:00
James Taylor
07897fc990
style: do not define .overlay, conflicts with trackster
2012-07-23 10:38:17 -04:00
James Taylor
2faa20f97f
style: Increase z-index of top nav tabs so the are over the brand when the window is narrow
2012-07-20 16:47:58 -04:00
James Taylor
901b042c0b
Add bootstrap transition to bootstrap.js, makes animations much more tolerable
2012-07-20 16:43:13 -04:00
James Taylor
3118446f4e
tooltips: Replace all uses of tipsy with bootstrap style (with the same modifications for placement we previously used for tipsy). This will allow us to start using popovers
2012-07-20 16:28:23 -04:00
James Taylor
96f6ea514b
Add support for bootstrap style tabs, use tabs in edit attributes form
2012-07-20 14:53:30 -04:00
James Taylor
83b5e65622
styles: We are not using icons from bootstrap so don't build in the sprites
2012-07-20 14:15:45 -04:00
James Taylor
43d6d27fe8
styles: Removed old styles (old_blue_style and light_hatched_style) that can't possibly work anymore
2012-07-20 14:08:36 -04:00
James Taylor
b83987b290
styles: Update to bootstrap 2.0.4. The bootstrap directory is now an *exact*
...
clone from github. Variables have been moved to
"galaxy_bootstrap_variables.less" for easy synchronization with upstream
variable additions. Changes that couldn't be made through variables are now
overrides in "galaxy_bootstrap.less" or "base.less"
2012-07-20 14:02:07 -04:00
James Taylor
25325e9208
Automated merge with https://bitbucket.org/galaxy/galaxy-central
2012-07-19 13:56:48 -04:00
James Taylor
bfbea0e199
Add a message to the root index page for browsers without javascript.
2012-07-19 13:55:48 -04:00
Jeremy Goecks
6a591eb48b
Viz framework: bigwig fixes and remove unnecessary type casting.
2012-07-19 10:59:20 -04:00
James Taylor
ccfc8ce3a7
Automated merge with https://bitbucket.org/galaxy/galaxy-central
2012-07-18 18:22:52 -04:00
Jeremy Goecks
9b2ec24928
Reintroduce directionality indication to single-block features as it is again compatible with current code.
2012-07-18 17:52:54 -04:00
Jeremy Goecks
be3f87204c
Code cleanup using JSHint.
2012-07-18 15:46:26 -04:00
Jeremy Goecks
13e2de0f01
Scope a1276b504934 to tool form inputs only.
2012-07-16 21:10:39 -04:00
Jeremy Goecks
55d0b2b751
Fix Trackster bug that was erroneously fetching reference data. Pack script.
2012-07-15 19:18:26 -04:00
Jeremy Goecks
b52909ad4a
Add icon to get from Trackster to Circster.
2012-07-15 19:02:59 -04:00
Jeremy Goecks
ef753ff3f2
Trackster: make sliders more responsive by waiting before drawing.
2012-07-13 19:44:21 -04:00
Jeremy Goecks
e38c49ea15
Tracks: make composite tracks compatible with recent Backbone enhancements and (b) whitespace cleanup.
2012-07-13 17:55:29 -04:00
Jeremy Goecks
40a85af02f
Use same colors for all tracks in parameter space viz.
2012-07-12 19:05:48 -04:00
Jeremy Goecks
94927ee10a
Pack script.
2012-07-12 15:53:32 -04:00
Jeremy Goecks
2176031471
Fix Trackster bug.
2012-07-12 15:53:00 -04:00
Jeremy Goecks
efc17f5f5f
Render all tracks in Circster using track preferences.
2012-07-12 13:21:16 -04:00
Jeremy Goecks
f0540824e1
Fix style of search submission icon in grids to prevent wrapping.
2012-07-12 09:43:21 -04:00
Jeremy Goecks
59dbff3de7
Bring grid button styles into alignment.
2012-07-12 08:59:34 -04:00
Jeremy Goecks
aa4f9ae4e2
Small viz tweaks.
2012-07-11 13:19:23 -04:00
Jeremy Goecks
9894424833
Add icon to set mode in paramamonster. Move chevron-expand icon from tracks CSS to base CSS.
2012-07-10 11:31:41 -04:00
Jeremy Goecks
ca89711e1b
Visualization framework enhancements: (a) support for unpacking complete genome/trackster visualizations and (b) Circster view now uses genome visualizations rather than individual datasets as model.
2012-07-09 09:45:34 -04:00
Jeremy Goecks
d337f612a7
Trackster bug fixes.
2012-07-06 16:05:15 -04:00
Jeremy Goecks
389ca4df36
Add introductory help text for paramamonster.
2012-07-05 11:26:24 -04:00
Jeremy Goecks
5571ce52ea
Make bookmarks available in shared Trackster visualizations.
2012-07-05 09:31:19 -04:00
Jeremy Goecks