 Aysam Guerler
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7ff91d8df6
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Merge pull request #19835 from guerler/markdown_editor.000
Improve markdown editor modularity and structure
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2025-03-19 13:45:26 -04:00 |
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John Chilton
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3c2dc7cbf8
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Merge pull request #19834 from jmchilton/auto_tpv_2
Syntactic sugar to ease TPV configuration.
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2025-03-19 10:13:37 -04:00 |
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Marius van den Beek
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691e5f08c0
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Merge pull request #19711 from afgane/rstudio24
Update RStudio IT
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2025-03-19 14:59:30 +01:00 |
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Enis Afgan
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1d215a7d2d
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Add RStudio IT based on upstream image from Bioconductor
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2025-03-18 16:45:14 -04:00 |
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John Chilton
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27da3de69d
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Syntatic sugar to ease TPV configuration.
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2025-03-18 13:23:42 -04:00 |
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guerler
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74c3cd5275
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Hide textarea field showing unstructured markdown text when moving from reports to pages
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2025-03-18 11:28:42 -04:00 |
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guerler
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611dcfcd9a
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Switch embeddable default in visualization xmls to false
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2025-03-18 11:27:42 -04:00 |
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guerler
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37961b4044
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Sort markdown arguments alphabetically
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2025-03-18 11:26:26 -04:00 |
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Nicola Soranzo
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4607d88509
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Merge branch 'release_24.2' into dev
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2025-03-17 12:00:29 +00:00 |
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Marius van den Beek
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a82ce9db5d
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Merge pull request #19810 from jmchilton/fix_failing_selenium_test
Fix Selenium workflow tests not updating param type properly.
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2025-03-16 22:46:24 +01:00 |
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Nicola Soranzo
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4421f43483
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Store maxseconds on GalaxyTestDriver
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2025-03-16 22:42:58 +01:00 |
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mvdbeek
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02d389f8fe
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Drop size assertions on tabix index
That's none of our business. We know index is valid if the chromosome
names are printed to stdout.
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2025-03-16 21:39:22 +01:00 |
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mvdbeek
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86d81fe83a
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Fix neostore.zip converter tests
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2025-03-16 15:03:50 +01:00 |
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mvdbeek
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570f6373a2
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Make bgzip a CompressedArchive subclass
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2025-03-16 14:30:03 +01:00 |
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mvdbeek
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6c3beffa78
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Reduce default framework tool test timeout to 60 seconds
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2025-03-16 12:50:38 +01:00 |
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Marius van den Beek
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f4a7b8b46d
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Merge pull request #19816 from galaxybot/dev_auto_update_dependencies
Update Python dependencies
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2025-03-16 12:07:25 +01:00 |
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mvdbeek
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6a610a1b4b
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Start work on 24.2.4.dev0
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2025-03-16 11:38:12 +01:00 |
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mvdbeek
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f82f1fc5e8
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Create version 24.2.3
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2025-03-16 11:37:42 +01:00 |
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Nicola Soranzo
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5fe5b53bf3
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Fix new ruff 0.11.0 errors
Also:
- Add and fix type annotations
- Fix call of `object_store_allows_id_selection()` method
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2025-03-15 17:12:02 +00:00 |
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mvdbeek
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ce03d9f7ca
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Merge remote-tracking branch 'upstream/release_24.2' into dev
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2025-03-15 16:32:42 +01:00 |
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galaxybot
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41e1a3cc9b
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Update Python dependencies
by running `make update-dependencies`.
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2025-03-15 03:12:58 +00:00 |
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David López
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f7acf17178
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Merge pull request #19347 from jmchilton/decompose_repeat
Rework some form components for reuse.
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2025-03-14 09:45:10 +01:00 |
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mvdbeek
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8622dfa237
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Merge branch 'release_24.2' into dev
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2025-03-14 09:32:27 +01:00 |
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John Chilton
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caa606c486
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Selenium fix for graying out invalid repeat buttons.
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2025-03-13 15:35:52 -04:00 |
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John Chilton
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c74093010b
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Fix workflow param tests not updating param type.
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2025-03-13 15:24:37 -04:00 |
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John Chilton
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808d5f9448
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Merge pull request #19807 from mvdbeek/use_materialized_datasets_in_pulsar
[24.2] Use materialized datasets in pulsar job runner
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2025-03-13 13:48:48 -04:00 |
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Marius van den Beek
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ca61f83ed5
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Merge pull request #19799 from mvdbeek/fix_tool_directory_transfer
[24.2] Fix tool directory pulsar transfer
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2025-03-13 17:58:33 +01:00 |
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mvdbeek
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31aeefd65f
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Use materialized datasets in pulsar
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2025-03-13 17:28:28 +01:00 |
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mvdbeek
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858593a8ba
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Fix transfer of $_TOOL_DIRECTORY subdirectories
Goes together with https://github.com/galaxyproject/pulsar/pull/385
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2025-03-13 16:19:10 +01:00 |
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Nicola Soranzo
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05b9467c35
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Merge branch 'release_24.2' into dev
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2025-03-13 00:37:29 +00:00 |
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Dannon
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1fb9cd4a77
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Merge pull request #19665 from ahmedhamidawan/rename_history_on_click
Click to edit history name in `HistoryPanel`
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2025-03-12 16:32:07 -04:00 |
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mvdbeek
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773301a679
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Provide explicit inputs
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2025-03-12 12:40:57 +01:00 |
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mvdbeek
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21f1fc9db2
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Use safe field names and alias to handle _ parameter names
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2025-03-12 12:40:56 +01:00 |
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John Davis
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bd75278ef9
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Merge pull request #19679 from jdavcs/24.2_role_name_displayed_name_description
[24.2] Fix private role name performance issue
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2025-03-11 15:03:48 -04:00 |
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John Davis
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b69a736a35
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Fix notifications
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2025-03-11 13:06:52 -04:00 |
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Martin Cech
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99678f2f86
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Merge pull request #19776 from bernt-matthias/topic/api-dec-fix
Fix wording of API doc string
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2025-03-11 16:59:32 +01:00 |
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Marius van den Beek
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ffcb2ca23e
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Merge pull request #19762 from jmchilton/edam_test_fix
Revise consistently failing edam tool panel view test.
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2025-03-11 15:59:04 +01:00 |
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Marius van den Beek
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740c0c56cd
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Merge pull request #19784 from sanjaysrikakulam/webdav_filesource_template_update
Update webdav user file source template help text
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2025-03-11 15:41:19 +01:00 |
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Nicola Soranzo
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679083d14e
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Merge branch 'release_24.2' into dev
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2025-03-11 11:20:14 +00:00 |
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Sanjay Srikakulam
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e086cf548d
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Update webdav user file source template
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2025-03-11 11:19:17 +00:00 |
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John Davis
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ef092809ab
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Fix groups create/edit permissions
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2025-03-11 00:34:26 -04:00 |
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John Davis
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a03673be98
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Fix append vs add in dataset controller
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2025-03-11 00:34:26 -04:00 |
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John Davis
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5251d94fab
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Ensure user's email is stored in user_context as their private role name
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2025-03-11 00:34:26 -04:00 |
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John Davis
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d128682abc
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Fix dataset manager: serialize_dataset_association_roles
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2025-03-11 00:34:26 -04:00 |
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John Davis
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f5da759245
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Fix api/group_roles::index
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2025-03-11 00:34:26 -04:00 |
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John Davis
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8de7851611
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Fix library_datasets::show_roles()
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2025-03-11 00:34:26 -04:00 |
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John Davis
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5c143ef75a
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Fix controllers/dataset::get_edit
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2025-03-11 00:34:26 -04:00 |
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John Davis
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3c2244bd50
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Fix library_folders::get_permissions()
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2025-03-11 00:34:26 -04:00 |
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John Davis
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3b35f1f58f
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Fix api/users::get_permissions()
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2025-03-11 00:34:26 -04:00 |
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John Davis
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5beeb96f92
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Fix history permissions
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2025-03-11 00:34:26 -04:00 |
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