Dave Bouvier
334983c4df
Added script to update NCBI builds list, replaced Broad data source with direct URL, cleaned up help text.
2012-08-23 16:36:58 -04:00
Dave Bouvier
8096e294a6
Added missing builds.txt for Ensembl, fixed erroneous first line in output.
2012-06-26 15:10:25 -04:00
Dave Bouvier
f44aa3553d
Added Ensembl build parser. Improved genome downloader interface. Added post-download indexing feature.
2012-06-25 09:39:41 -04:00
Kelly Vincent
d3d26a7149
Modified add_manual_builds script so that it will include the build in parentheses after the name even if there are no chromosome lengths listed (previously would not because of line break after name); also added a couple of new manual builds
2011-03-29 13:59:07 -04:00
Kelly Vincent
b5ee9ee8c7
Modified script that adds manual builds to add build even if chrom length details not present; added a few new manual builds
2011-03-10 13:28:33 -05:00
Nate Coraor
4186a549de
POSIXize/Bournize updateucsc.sh.sample
2009-09-10 17:31:05 -04:00
Daniel Blankenberg
481f69fb6f
Have update_ucsc.sh.sample add 'chrom' dir to tool-data/shared/ucsc as needed. This empty directory was lost from the repository in the svn to hg conversion.
2009-08-10 14:00:47 -04:00
Kanwei Li
e6777af8eb
Typos in cron/README.txt
2009-08-03 13:25:47 -04:00
Nate Coraor
c998a43692
Apparently I only committed these fixes to security. Recommit of changeset 2015:7a447128f2cd from security, Make UCSC build update scripts find elementtree properly
2009-01-24 12:13:47 -05:00
Daniel Blankenberg
86f0862aa4
Move ucsc and gbrowse data from static to tool-data/shared.
...
Cron scripts on test and main will need to be updated when the server is.
GOPS complement tool and annotation profiler will now correctly use chromosome lengths files if available.
2008-06-03 18:53:26 +00:00
Nate Coraor
0113b008a1
Forgot to getopt -n...
2008-05-06 13:14:49 +00:00
Nate Coraor
e617b271e7
Add -n option to check_galaxy.py cron wrapper.
2008-05-05 16:07:16 +00:00
Greg Von Kuster
af3b0669aa
Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.
2008-03-28 15:24:50 +00:00
Nate Coraor
d7172bc329
A couple small tweaks to the monitor.
2008-03-14 16:49:42 +00:00
Nate Coraor
4df247e8d3
Automatically create the var dir.
2008-03-14 16:14:41 +00:00
Nate Coraor
f675e37400
The Galaxy Monitor, and its cron wrapper.
2008-03-14 16:07:30 +00:00
Daniel Blankenberg
c0e78cd02a
Update cron scripts to reflect the fact that ElementTree is now an egg.
2006-12-14 22:04:05 +00:00
Daniel Blankenberg
74784e1755
Pushing my changes from james-wsgi branch onto the trunk.
...
Biomart doesn't work on the trunk yet (Before or after this commit).
axt to lav tool won't be functional until multiple datasets per history item is available on trunk - although I could
make it so that only the lav file is generated and no fasta files, in which case it wouldn't be an issue.
2006-12-14 21:02:17 +00:00
James Taylor
f788a34fca
Moving james-wsgi branch to new trunk.
2006-11-15 16:28:21 +00:00
Dave Bouvier