John Chilton
8dbf987e10
Merge pull request #2455 from erasche/grt
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Galactic Radio Telescope
2016-07-21 20:06:12 -04:00
John Chilton
76628c7203
Refactor grt.py method names to be clear public interface is only main().
2016-07-21 14:59:29 -04:00
John Chilton
bbe1d7bed0
Remove custom Galaxy config parsing in grt.py.
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Use existing abstractions - so things like environment variable based configuration will work.
2016-07-21 14:59:29 -04:00
John Chilton
1f292824a1
Fix some obvious Python 2isms in grt client...
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... and one instance of bare exception.
2016-07-21 14:59:27 -04:00
John Chilton
a93874fe7b
Define a main() function for grt client.
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This is purely stylistic - but I prefer to structure code to allow testing even if there are no actual test cases yet.
For more information see discussion here - http://stackoverflow.com/questions/4041238/why-use-def-main .
2016-07-21 14:59:05 -04:00
John Chilton
6432eae251
Give grt a top-level docstring.
2016-07-21 14:33:58 -04:00
John Chilton
0280daebef
grt.ini.sample is a YAML file, git it a YAML extension.
2016-07-21 14:31:25 -04:00
Dannon Baker
61a11341f9
When CONDA_ALREADY_INSTALLED is undefined there's an error due to the number of arguments in the boolean expression (we actually *do* always want a 1 or 0 there, never empty)
2016-07-08 10:52:08 -04:00
Remi Marenco
de702db55d
s/creation/activation. Thx @nsoranzo
2016-07-07 15:45:40 -04:00
remimarenco
b53a9275d5
Add Warning when Conda is installed because we skip the virtualenv creation
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Fix the case where we could have conda not installed but not setting VirtualEnv still (and have this non relevant warning
2016-07-07 14:34:40 -04:00
Dannon Baker
a946b04316
Merge pull request #2574 from bxlab/python3
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Python3: port 215 files
2016-07-05 09:57:54 -04:00
Eric Enns
417d43fb3e
Added upload1 to tool blacklist
2016-06-26 09:19:57 -05:00
Nicola Soranzo
cd13423953
Python3: small fixes to previous commits
2016-06-26 02:43:57 -04:00
Junzhou Wang
f68a8198da
Python3: scripts/cleanup_datasets scripts/data_libraries
2016-06-25 21:49:25 -04:00
Eric Enns
2fc3ffffff
Removed unused copy import
2016-06-25 20:13:37 -05:00
Eric Enns
0383d47037
Added in params reporting with initial sanitization
2016-06-25 20:09:52 -05:00
Junzhou Wang
e45f8abb54
Python3:script/api/
2016-06-25 20:49:06 -04:00
Junzhou Wang
a04f6589ea
Python3: test/shed_functional/ and test/unit/
2016-06-25 20:00:42 -04:00
Dannon Baker
a0b20a61a2
Initialize objectstore for fix_set_dataset_sizes script (otherwise it doesn't currently run successfully)
2016-06-25 19:04:44 -04:00
Eric Enns
0c24b1c408
Fixed remaining flake8 issues
2016-06-25 14:26:40 -05:00
Eric Enns
db4abace58
Flake8 fixes
2016-06-25 14:08:43 -05:00
Eric Enns
5cd9423677
Added grt_url to grt.ini.sample and removed default from argparse
2016-06-25 14:04:23 -05:00
Eric Enns
c2239b1d9b
Moved almost all cmd line parameters to config file.
2016-06-25 14:00:50 -05:00
Eric Enns
473b7eadc1
Added in tool_blacklist
2016-06-25 13:15:45 -05:00
Eric Enns
bb3f026bfa
Removed call to args.days
2016-06-25 13:00:22 -05:00
Eric Enns
722695a01b
Added in last_job_id_sent and removed days options so no duplicates will be sent.
2016-06-25 12:54:19 -05:00
Eric Rasche
d1d8642756
Change metric captured
2016-06-25 17:16:08 +00:00
Eric Rasche
012101692c
Ignore metadata setting
2016-06-25 16:42:04 +00:00
Eric Rasche
9e596cdf5f
E303
2016-06-04 20:46:44 +00:00
Eric Rasche
b1a07c0cfb
Submit more metadata
2016-06-04 16:18:50 +00:00
Eric Rasche
6344ff40fd
Make time length an option
2016-06-04 16:18:08 +00:00
Eric Rasche
d032a1a4aa
Linting
2016-06-04 15:47:57 +00:00
Eric Rasche
f2941c47aa
Add Galactic Radio Telescope script
2016-06-03 22:33:49 +00:00
Nicola Soranzo
cc336f61c0
Make some files compatible with Python3
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Also enlarge the set of files tested with flake8 under Python3
2016-06-03 19:24:46 +01:00
John Chilton
ebd3250253
Merge pull request #2383 from natefoo/manylinux-support
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Drop "Galaxy pip" in favor of manylinux1 wheels (which are supported in pip >= 8.1)
2016-05-23 09:12:08 -04:00
Martin Cech
a743e530d0
Merge pull request #2388 from jmchilton/bootstrap_history_somemore
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Ever more informative, explicit, and complete release checklist.
2016-05-20 11:41:55 -04:00
John Chilton
308f74a25a
Ever more informative, explicit, and complete release checklist.
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- Update announcement acitivties to reflect release notes handled by devs in a diffrent, earlier step.
- Add example post links for various announcement activities.
- Add credential location information for Twitter.
- Add branch-time item to update bioblend target testing.
- Add item for scheduling a committer priority meeting (as done for this release by @martenson - thanks for taking charge on that!).
2016-05-20 10:50:24 -04:00
Nate Coraor
1be90e49b1
Remove unused $GXPIP_VERSION
2016-05-20 09:44:55 -04:00
Nate Coraor
39d78c7226
Drop "Galaxy pip" in favor of manylinux1 wheels (which are supported in
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pip >= 8.1).
2016-05-19 14:42:52 -04:00
Eric Rasche
d1e07e989d
Add devteam
2016-05-19 17:51:19 +00:00
Eric Rasche
49cb1d6a0a
Note on updating tool testing
2016-05-19 17:41:40 +00:00
Björn Grüning
6e6bfc796d
Update template to include the release of the Docker container
2016-05-19 16:51:14 +02:00
Martin Cech
702fe3c112
Merge pull request #2372 from jmchilton/release_process_revise_again
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More clarification of release process.
2016-05-18 10:43:00 -04:00
John Chilton
5a8d2a1ad8
More clarification of release process.
2016-05-18 08:03:08 -04:00
Nicola Soranzo
6ba6f798ec
Fix more E203 flake8 errors
2016-05-17 23:53:16 +01:00
Nicola Soranzo
8a43b2b492
Python 3: use "as" instead of comma in except clause
2016-05-17 23:53:16 +01:00
Nicola Soranzo
ed4132d9c0
Python3: Use open() instead of file()
2016-05-17 23:53:16 +01:00
Dannon Baker
6fc2ae42cd
Merge pull request #2295 from matthdsm/patch-4
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update check for Conda env.
2016-05-17 09:43:41 -04:00
matthdsm
ea2e9163d6
changed grep statement to match 2 patterns
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Now matches both "anaconda" and "continuum analytics"
2016-05-17 08:06:21 +02:00
Martin Cech
70c65f6bd2
remove prints
2016-05-16 15:58:21 -04:00
John Chilton