Commit Graph
203 Commits
Author SHA1 Message Date
Dannon Baker 0f5239dd32 Merge pull request #2700 from varunshankar/doc_dev
A tutorial on Build runner for galaxy
2016-08-11 15:58:42 -04:00
Varun Shankar S 115df2963e Update build_a_job_runner.rst 2016-08-10 01:59:59 +05:30
Varun Shankar S a06347102d Update build_a_job_runner.rst 2016-08-10 01:56:56 +05:30
Varun Shankar S dbd5c84835 Update build_a_job_runner.rst 2016-08-06 01:01:02 +05:30
Varun Shankar S 5e639f2bbd Update build_a_job_runner.rst 2016-08-05 16:45:34 +05:30
Dannon Baker 54a019435c Convert to RST, fix image references. 2016-08-04 12:47:28 -04:00
Varun Shankar S 0b8060619e Update Build_a_runner_for_galaxy.md 2016-08-02 22:05:36 +05:30
Varun Shankar S 5239774fc6 Update Build_a_runner_for_galaxy.md 2016-08-02 16:53:25 +05:30
Varun Shankar S 0e79c82480 Add tutorial for building a runner for galaxy 2016-08-02 16:43:35 +05:30
Dannon Baker c7caeb3c39 Merge branch 'azure-blob-objectstore' into dev 2016-07-27 23:06:18 -04:00
John Chilton 8dbf987e10 Merge pull request #2455 from erasche/grt
Galactic Radio Telescope
2016-07-21 20:06:12 -04:00
Alexander Lenail 0a49f17411 Modified galaxy.objectstore.rst
Not sure how RST works — would appreciate some guidance here.
2016-07-19 15:27:01 -04:00
Peter van Heusden 4860cc7156 Added correct link to index.rst 2016-06-25 23:42:43 +02:00
Peter van Heusden cd0932600f Modified Apache/nginx settings suggestions 2016-06-25 23:26:24 +02:00
Peter van Heusden 63abe20ab8 Replace single with ` 2016-06-25 22:57:36 +02:00
Peter van Heusden e73a8071f5 Addressed @erasche's comments 2016-06-25 21:42:25 +02:00
Peter van Heusden 19ab4f793b Add link to IE dev docs 2016-06-25 20:57:05 +02:00
Peter van Heusden d02f1f1d6a * Update docs on Interactive Environments
* Move docs on writing IEs to developer docs
2016-06-25 20:54:37 +02:00
Eric Rasche bf8f8e2d08 Document GRT 2016-06-04 16:19:26 +00:00
Martin Cech 3afe31649f minor docs touch 2016-05-27 15:38:48 -04:00
Martin Cech ad3a65a688 remove the comment that breaks toc generation 2016-05-18 14:54:48 -04:00
John Chilton f887c059a2 Expand 16.04 highlights... 2016-05-18 07:26:25 -04:00
Martin Cech 9d5bf7b62d minor release notes touch 2016-05-17 15:56:50 -04:00
Martin Cech 50e596fb1b reorder sections, un-quote bitbucket paragraph 2016-05-17 15:51:23 -04:00
Martin Cech afb9027482 final touch of release notes from my side 2016-05-17 15:48:00 -04:00
Martin Cech 62b6eaa92a Merge branch '16.04_release_notes' of https://github.com/martenson/galaxy into 16.04_release_notes 2016-05-16 17:08:32 -04:00
Martin Cech 3b7f6cb777 add some highlights, seems tough for this release 2016-05-16 17:07:32 -04:00
Nicola Soranzo 76fb9b72c3 Add some missing PRs and merge some entries 2016-05-13 16:12:15 +01:00
Nate Coraor dc5a5eb2eb Add Bitbucket deprecation details 2016-05-13 10:30:52 -04:00
Nicola Soranzo c516c9fd45 Fix truncated PR titles and some acknowledgements 2016-05-13 12:34:12 +01:00
Nicola Soranzo b85d604e30 Move some PRs that were merged in 16.01 before its release
Galaxy 16.01 was officially released on 2016/02/24.
2016-05-13 12:11:30 +01:00
Martin Cech db5c0d95f6 reorde notes a bit more based on impact/importance 2016-05-12 17:43:14 -04:00
Martin Cech 65e1d68efd typo 2016-05-12 17:37:08 -04:00
Martin Cech 633162c7f5 fix wrong merge 2016-05-12 17:31:22 -04:00
Martin Cech edbc82c215 Merge branch '16.04_release_notes' of https://github.com/martenson/galaxy into 16.04_release_notes
Conflicts:
	doc/source/releases/16.04_announce.rst
2016-05-12 17:28:00 -04:00
Martin Cech e0a9efc307 include security note for hg upgrade; some reordering 2016-05-12 17:25:07 -04:00
carlfeberhard 86127cdfdd Update 16.04_announce.rst
Fix my rst syntax.
2016-05-12 17:20:06 -04:00
carlfeberhard 40e596f264 Update 16.04_announce.rst
Added more deprecations from #1757
2016-05-12 17:12:45 -04:00
Martin Cech 93d1d5611e add deprecation notices 2016-05-12 16:40:01 -04:00
Martin Cech d8430e5c4b generated notes with basic manual curation 2016-05-12 16:22:56 -04:00
John Chilton 51f63a7d3e Replace embedded Pulsar code with dependency.
Pulsar's setup.py has been parameterized to allow it build a special wheel that doesn't depend on galaxy-lib (https://github.com/galaxyproject/pulsar/commit/ce9d4f9e80936407fe4f793afa6688d75635e827) and instead expects it to come from the environment.

This special dependency has been published to PyPI here (https://pypi.python.org/pypi/pulsar-galaxy-lib) and added to StarForge here (https://github.com/galaxyproject/starforge/pull/79). These are now available on wheels.galaxyproject.org.

In addition to removing the source dirctories - I have removed doc and CI references to these directories.
2016-03-31 08:17:06 -04:00
John Chilton eee044aa70 Work toward automating deployment.
Create new makefile targets for release management.

 - ``release-create-issue``: Automates creating a release checklist - https://github.com/jmchilton/galaxy/issues/41)
   Check list contains actual tailored ``make`` commands and links (for PRs and issues).
 - ``release-check-metadata``: Checks milestone PRs for required metadata needed for generating bootstrapped release notes.
 ` ``release-bootstrap-history``: Bootstrap release notes from PRs and metadata.
 - ``release-check-blocking-prs``: Check for PRs blocking release, should happen before branching release and before tagging release.
 - ``release-check-blocking-issues``: Check for Issues blocking release, should happen before tagging release. (Only allowed issue is the release creation issue.)

The issue created with ``release-create-issue`` documents how and when to execute subsequent ``make`` targets (including the target to create the issue for the next release).

This PR contains a bunch of other enhancements to the bootstrap_history.py script to enable these targets and renames ``create_release_rc`` Makefile target so all release related targets start with the prefix ``release-``.

Conflicts:
	Makefile
2016-03-16 15:02:02 +00:00
Dannon Baker a7b1ce7670 Update doc 2016-03-09 09:09:52 -05:00
Nate Coraor 63d7b7a212 Merge branch 'release_16.01' into dev 2016-02-24 12:31:59 -05:00
Nate Coraor c6b010af34 Add security announcement to v16.01 release notes. 2016-02-24 12:30:56 -05:00
Nate Coraor 1f530b45b3 Merge branch 'release_16.01' into dev 2016-02-24 10:58:54 -05:00
John Chilton f2a27acff8 Drop Python 2.6 with 16.04.
xref #1596
2016-02-22 11:40:01 +00:00
Nicola Soranzo e3b1fc1bef Merge pull request #1698 from jmchilton/ross
[PROCEDURES] Drop Ross from the committers group.
2016-02-17 17:36:42 +00:00
John Chilton b2da133e07 [PROCEDURES] Add Marius van den Beek to Galaxy committer group.
Marius has been an indispensable member of the Galaxy community for a while - his contributions to tools, planemo, and ansible roles have been signficant and invaluable.

However over the last several months he has taken a very active role on the Galaxy central code base itself. He has worked through a number of very intricate bugs to tool shed, tooling, and workflow code - consistently providing high quality and important bug fixes. Beyond that he has made signficant enhancements to the testing of Galaxy and workflow available to tool developers leveraging local tool sheds. He also is very active in the review of issues and pull requests, perhaps the most important role of Galaxy committer group members.
2016-02-08 18:47:48 +00:00
John Chilton 80f4a5eaed [PROCEDURES] Drop Ross from the committers group.
Ross Lazarus has done a lot for Galaxy for a long time and has been a fantastic presence in the community. He is now retired and has no intention of touching the code or reviewing pull requests so I think it is best to remove him from the committers list. I have contacted him to confirm this and he has no problem with his removal from this group.

Just to reiterate, this isn't a condemnation of any kind, from the organization policies - "Periodically, active members may review this group and request inactive members are removed - this should not be interpreted as a condemnation of these inactive members but merely as a reflection of a desire to keep this group focused enough to remain effective."
2016-02-08 18:37:21 +00:00