 Jeremy Goecks
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bb7cfbc11b
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Trackster: use icons for setting data transparency, height based on filter values.
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2011-12-26 17:24:30 -05:00 |
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Jeremy Goecks
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0a3eb41ae4
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Trackster: when running tools, replace track with group.
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2011-12-22 13:11:34 -05:00 |
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Jeremy Goecks
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63523e1dcb
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Trackster: fix bug in 13ba6909faae that prevented display in Dense mode.
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2011-12-17 14:29:23 -05:00 |
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Jeremy Goecks
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c18c8a1901
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Trackster: make FeatureTracks compatible with 09c6c980e463 in preparation for enabling FeatureTracks in composite tracks.
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2011-12-14 17:36:18 -05:00 |
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Jeremy Goecks
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a5e1ef2b6e
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Trackster: small fixes so that ReferenceTracks are compatible with changes in 09c6c980e463
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2011-12-14 15:25:03 -05:00 |
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Jeremy Goecks
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ca3219e25f
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Trackster: more memory-efficent drawing of composite tracks. Composite tracks are now drawn and composited on a single tile rather than compositing using multiple tiles. Currently only LineTracks are supported.
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2011-12-12 15:58:36 -05:00 |
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Jeremy Goecks
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72795a888c
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Trackster: remove unused parameter from draw_helper function.
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2011-12-12 13:26:58 -05:00 |
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Jeremy Goecks
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e310624be1
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Trackster: (a) fix small bug in drawing composite tracks and (b) pass canvas in as argument to draw_tile.
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2011-12-10 12:25:44 -05:00 |
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Jeremy Goecks
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b466b2fa14
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Trackster bug fixes for random color generation and LineTrack display in line and intensity modes.
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2011-12-10 10:35:31 -05:00 |
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Jeremy Goecks
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b8be0448de
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Trackster: fix bugs in e1da72b42db7 that prevented adding tracks.
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2011-12-09 17:03:33 -05:00 |
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Jeremy Goecks
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f93d81751d
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First pass on composite tracks. To facilitate composite tracks, draw_helper now returns jQuery Deferred objects rather than null when drawing cannot occur so that tile drawing can be more closely tracked. Current limitations of composite tracks: (a) can be created only inside groups; (b) only tracks of the same type can be composited; and (c) no normalization is done b/t tracks. Also implemented generic save/restore functionality. Pack JS scripts.
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2011-12-09 15:38:03 -05:00 |
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Jeremy Goecks
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5100b0e075
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Trackster: standardize tile cache creation and size.
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2011-12-08 09:00:47 -05:00 |
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Jeremy Goecks
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0e703fc6c6
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Trackster: enable tracks to share data managers.
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2011-12-07 15:50:58 -05:00 |
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Jeremy Goecks
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44ffc80d97
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Trackster: (a) bug fixes and refactoring and (b) prepartion for composite tracks.
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2011-12-07 11:31:51 -05:00 |
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Jeremy Goecks
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74799ec699
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Remove unneeded vis_id parameter from tracks/chroms method.
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2011-12-03 17:06:33 -05:00 |
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Jeremy Goecks
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abc524f5a2
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Trackster bug fix: add missing object reference.
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2011-12-02 14:20:29 -05:00 |
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Jeremy Goecks
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ad7d37774d
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(1) Fail gracefully when visualization cannot be saved and (2) fix bug in setting modal's minimum width.
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2011-12-02 13:56:45 -05:00 |
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Jeremy Goecks
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b22b2358dc
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Trackster: interpret feature track data using 0-based, half-open coordinate system.
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2011-12-02 11:10:04 -05:00 |
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Jeremy Goecks
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fc66cff96b
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Trackster: fix bug in determining when to display filters.
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2011-12-01 15:01:28 -05:00 |
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Jeremy Goecks
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1fb135cc15
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Trackster: refactor action icon creation and initialization.
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2011-11-23 16:11:39 -05:00 |
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Jeremy Goecks
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85e4fe3547
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Fix Tile variable name so that it connotes what it actually stores.
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2011-11-19 18:15:24 -05:00 |
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Jeremy Goecks
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b7699f7cf0
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Trackster performance improvements: (a) build tile messages only once during tile creation and (b) move tiles rather than show/hide tiles when scrolling.
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2011-11-18 11:52:24 -05:00 |
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Jeremy Goecks
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65e47b189d
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Pack js scripts.
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2011-11-17 15:08:49 -05:00 |
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Jeremy Goecks
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8ed4d08bea
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Trackster: significant refactoring to unify Drawables' HTML structure and also facilitate customization. Groups now use icons and can show/hide content.
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2011-11-15 18:04:09 -05:00 |
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Jeremy Goecks
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c8042d9952
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Fix bug in Trackster's 'Add Datasets to Visualization' button.
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2011-11-15 15:50:36 -05:00 |
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Jeremy Goecks
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be4b903d28
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Rename toggle-contract to toggle in CSS so that CSS class name matches icon file name.
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2011-11-15 15:29:25 -05:00 |
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Jeremy Goecks
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5b19eed45e
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Make history UI icons compatible with changes in 9dbc82483bd2.
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2011-11-14 12:12:52 -05:00 |
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Jeremy Goecks
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07bc916171
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Trackster: use icon to set track mode.
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2011-11-10 19:01:31 -05:00 |
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Jeremy Goecks
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ebdaf62c90
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Make toggle icons use black and white and color on hover to match other Trackster icons.
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2011-11-10 16:16:26 -05:00 |
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Dannon Baker
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8c4f54ff77
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Repack of .js
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2011-11-10 08:54:23 -05:00 |
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James Taylor
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a5224d49e9
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Trackster: dense mode features are full height again, don't draw strand indicators when drawing squished features.
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2011-11-08 11:37:12 -05:00 |
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James Taylor
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98513d7e2f
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Trackster: fix strand drawing for single blocks with no thin/thick part
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2011-11-07 18:22:47 -05:00 |
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James Taylor
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c4cb89efc2
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Trackster: code for adding multiple bookmarks from a dataset. Currently the button is commented out until this can be made more usable
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2011-11-07 16:59:15 -05:00 |
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James Taylor
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75b4737ea2
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Trackster: fix loading of track connector style when initializing from saved
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2011-11-07 15:36:46 -05:00 |
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James Taylor
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583799bea9
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Trackster: allow selecting the arc connector style for feature tracks, add support for select config parameter type
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2011-11-07 12:34:23 -05:00 |
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James Taylor
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18fcf1ca29
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merge
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2011-11-07 10:27:50 -05:00 |
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James Taylor
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43ec3def31
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Trackster: use hover event for feature track popups
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2011-11-07 10:21:17 -05:00 |
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Jeremy Goecks
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7e001829db
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Trackster: tooltips for navigational elements and better showing/hiding of add tracks button.
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2011-11-05 19:12:07 -04:00 |
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Jeremy Goecks
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901fdbb613
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Trackster: color reads based on strand aligned to.
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2011-11-05 18:21:38 -04:00 |
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James Taylor
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e669a876aa
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Trackster: making config form generation for parameters a function so it can be used recursively (for conditional configuration, not yet implemented)
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2011-11-05 14:55:11 -04:00 |
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James Taylor
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5ea4590857
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Trackster: show color pickers to left of input rather than underneath
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2011-11-02 18:07:28 -04:00 |
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Jeremy Goecks
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93dbdc044a
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Trackster: fix bug in showing 'add datasets' button and rename update_track_icons to update_icons for clarity.
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2011-11-02 18:05:38 -04:00 |
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James Taylor
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96cfea923d
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Trackster: allow track contents to be hidden without removing track. Hidden tracks are condensed and not drawn. TODO: whether a track is hidden is not currently saved. No easy way to inherit prefs right now.
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2011-11-02 17:53:00 -04:00 |
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Jeremy Goecks
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cefa76b491
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Trackster: (a) give every Drawable unique id and (b) remove unused reference to jquery.scrollTo.
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2011-11-02 17:48:22 -04:00 |
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James Taylor
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2ca322c0e2
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Trackster: allow configuration elements to have help text
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2011-11-02 13:37:24 -04:00 |
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James Taylor
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4464b804e2
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Make default height for LineTracks smaller, 32px seems more reasonable. Possibly it should be larger if there is both positive and negative data?
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2011-11-01 18:56:34 -04:00 |
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Jeremy Goecks
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b6d64f6a52
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Fix vertical scrolling via keyboard in Trackster.
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2011-11-01 17:51:53 -04:00 |
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James Taylor
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deb23fce11
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Automated merge with https://bitbucket.org/galaxy/galaxy-central
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2011-11-01 14:54:25 -04:00 |
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James Taylor
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501bd68cd1
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Trackster: set min/max values for wiggle tracks using standard deviation. Add a new FeaturePainter that uses Arcs to connect blocks. Allow FeaturePainters to provide (computed) top and bottom padding around the rows where features are drawn.
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2011-11-01 14:54:11 -04:00 |
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Jeremy Goecks
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0fddc97e94
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Trackster: (a) refactor tool data functionality into TiledTrack class so that it is generally available; (b) enable VcfTracks to work with tools; and (c) more robust parameter setting. Enable Unified Genotyper to work with Trackster.
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2011-11-01 10:49:34 -04:00 |
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