9 Commits

Include renames

Author	SHA1	Message	Date
Dannon Baker	668d03ba7d	Initial commit of Mosaik and Freebayes.	2011-02-23 14:01:58 -05:00
Kelly Vincent	76b3cb5844	Added BWA color space wrapper; fixed names of FASTQ test files to indicate data type	2011-01-12 12:13:54 -05:00
Daniel Blankenberg	b9d790af55	Add CCAT ChIP-seq peak/region caller.	2011-01-03 11:15:29 -05:00
Kelly Vincent	1dae87b797	Modifed tophat wrapper to work with data tables and fixed problem with index path; also got tests working	2010-11-17 12:01:45 -05:00
Kelly Vincent	7d0ff14df9	Converted several tools to data table style of loc file handling (Bowtie, BWA, Lastz, Megablast, PerM, SRMA). Cleaned up several tool XML files, removing unnecessary None parameters.	2010-11-08 00:10:13 -05:00
Kelly Vincent	c75adfdda5	Adding NGS simulation tool	2010-11-03 13:52:52 -04:00
Daniel Blankenberg	94c7417f37	Add BFAST Mapper tool and wrapper.	2010-08-18 16:52:06 -04:00
James Taylor	4fa4d17c88	Update tool data table config file	2010-07-08 15:21:38 -04:00
James Taylor	c664344f11	Two missing files from previous commit (tool data tables)	2010-07-08 15:01:19 -04:00