1. Fix a bug that included the option for a regular user to upload a directory of files when the config setting existed, but the user's directory did not exist.  Instead of throwing an exception, an attempt to create the directory will now be done.  If the attempt fails, the option to "Upload a directory of files" will not be included in the select list on the upload form.
2. When browsing a data library, only display the check boxes and the actions to perform on multiple selected datasets if library datasets are displayed.
3. Clean up the behavior when performing an action on multiple library datasets.  Instead of throwing an error and not allowing the action on any of the datasets if the user is not authorized to perform the action on 1 of them, all "unauthorized" datasets are now left alone and the action is performed on all datasets for which the user is authorized to perform the action.  Appropriate messages detail what occurred.
4. Allow regular users to delete multiple datasets returned from library dataset searches based on the behavior described in 3 above.
5. Do not include the "Select datasets for import into selected histories" option in the actions pop-up menu at the data library level if the library's root folder doesn't contain any accessible datasets.  Make behavior the same for folder popup menus.
6.  Add a new LibraryFolder.active_datasets mapper and eliminate the incorrect LibraryFolder.active_library_datasets property.  Callers of the incorrect property now use the mapper.
7. Eliminate the incorrect LibraryFolder.active_datasets property.
8. Fix the queries in the library_common controller's active_folders_and_lddas() and activable_folders_and_lddas() methods to return library_datasets instead of lddas, and rename the methods to be active_folders_and_library_datasets(0 and activatable_folders_and_library_datasets() respectively.
9. Fix bug where regular user could never see deleted library items when toggling show / hide deleted items.
10. Fix functional test for uploading directories of files to a library folder.  The test generally failed because not enough time would elapse before checking if the files uploaded.  The check is now performed in a later method in the test script, hopefully allowing for enough time to pass.
11. Functional test code clarifications for the browse_library() test method.
1. Enhance importing library dataset into the current history by now allowing the user to select from a list of existing histories or create a new named history ( similar to copying datasets ).  This feature is available for a specific library dataset, a folder ( or root folder ), when selecting multiple datasets from in a library,  and on the results page for searched library datasets.
2. Add Brad Chapman's latest patch for fixing the lucene search implementation
3. Eliminate searches on dataset state for both whoosh and lucene searches
4. Clarify the objects being searched in the regular search and advanced search boxes in the data libraries grids.
5. Add the ability to perform certain actions on 1 or more selected library datasets on the results page for searched library datasets.
6. Add a "select all" checkbox to the browse_library.mako template.
7. Fixed library functional tests accordingly.
Refactored getting form values into a separate method in controller.py.
Changed request type access into a restrict permission.
Added a check when sequencer_types are not loaded.
- sequencer table now populated with the unique sequencer in the request_type table
- sequencer_type is introduced which defines a sequencer
- support for sequencer (create, delete, edit)
- added support for a simple sequencer for backward compatibility
- added support for Solid sequencer
- tweaked the request_type api methods. removed the sequencer login info.
(2) Enhance and cleanup the test_library_security.py functional test script to cover new features.
(3) Clean up security checking code recently added to the library-common controller by creating methods for checking permissions and calling the methods when necessary.
(4) Add checks to the security controller methods to only flush to the db when necessary.
(5) Add a pop-up menu for folders in the Data Libraries perspective to enable users to view folder information since it may include template information.
(6) Fix all currently broken library-related functional test - should now all be green.
1. Add support for handling inherited library temnplates that include all supported field types ( AddressField, CheckboxField, SelectField, TextArea, TextField, WorkflowField ) to the upload form for library datasets. New userAddress objects can now be created on the upload forms.
2. Improve the UI for selecting tempaltes for library items - it is now clear that the displayed template is not useable since it is disabled and a message is displayed.
3. Automatically inherit template contents from parent for inherited templates.
4. Fix the AddressField UI to display the required fields for rendered html.
5. Add new test_library_templates.py functional test script.
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- first pass for state change mechanism for multiple samples
- UI enhancements: checkboxes to select samples & selectfield to select specific operation
- removed state change UI for individual samples in the sample_events page
next is selecting library for multiple samples
Daniel Blankenberg