 Carl Eberhard
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b8fb01b2cc
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(alt)history: split files up, rework names, add global Galaxy namespace
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2012-11-06 15:54:47 -05:00 |
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Carl Eberhard
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48d58a8e58
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pack scripts
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2012-11-06 14:09:40 -05:00 |
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Carl Eberhard
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88ec8035d1
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quota meter: fix multiple api calls on first history render; controllers/root.py: set up to move show_deleted/hidden into client
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2012-11-06 14:07:21 -05:00 |
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Jeremy Goecks
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a6fd79c548
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Circster improvements: (a) fetch a smaller amount of data on load and (b) use large quantile rather than max for top data range to limit impact of exceptionally large values.
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2012-11-06 09:52:23 -05:00 |
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Carl Eberhard
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b9741f77df
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(alt)history: incorporate quota meter; bugifxes
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2012-11-05 16:59:20 -05:00 |
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Carl Eberhard
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2b2bc12005
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added user backbone model; added quota meter view on user model
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2012-11-05 16:56:28 -05:00 |
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Jeremy Goecks
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aa2d69a4e3
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Pack scripts.
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2012-11-04 21:44:29 -05:00 |
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Jeremy Goecks
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2ee25fa5d3
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When running tools in Trackster, use Region object.
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2012-11-04 19:26:33 -05:00 |
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Jeremy Goecks
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7a0ce2c94f
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Transition track labels when adding/removing tracks.
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2012-11-04 14:49:46 -05:00 |
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Jeremy Goecks
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f4db9b8be4
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Circster: (a) create mixin for drawing tick labels and (b) use ticks for denoting chromosome length and track min/max.
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2012-11-02 16:15:15 -04:00 |
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Jeremy Goecks
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3d491f63c1
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Pack scripts.
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2012-11-01 13:27:07 -04:00 |
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Jeremy Goecks
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49847e35c2
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Provide option to retry dataset indexing/conversion in Trackster. Also, move is_true method into Web helpers for general access.
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2012-11-01 10:04:12 -04:00 |
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Jeremy Goecks
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147d6c94e0
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Viz framework: (a) add option to store open file reference in data providers rather than recreating each time and (b) add ticks marks in Circster for chromosome lengths.
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2012-10-31 17:51:38 -04:00 |
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Carl Eberhard
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8e6ebda032
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pack scripts
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2012-10-30 16:42:11 -04:00 |
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Carl Eberhard
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320706f329
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history.js: add hda updater, pull model data from common api code (in initial mako render, and on fetch/update), set up url templates for history, hda models
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2012-10-30 16:39:47 -04:00 |
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Jeremy Goecks
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7b19a84ba8
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UI framework enhancements: (a) upgrade to jQuery UI 1.9.1; (b) remove version information from jQuery UI file names; (c) add generic jQueryUI search+select combobox widget; (d) use combobox widget for choosing dbkey in Trackster visualizations. Also pack scripts.
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2012-10-30 09:07:29 -04:00 |
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Dannon Baker
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63125fcdd1
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Pack workflow editor javascript to be compatible with changes in pull request #76
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2012-10-25 10:52:26 -07:00 |
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James Taylor
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114e12ad2c
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Merged in mgehring/galaxy-central (pull request #79)
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2012-10-24 15:14:31 -04:00 |
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mgehring
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135b148196
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Fixed data retrieval and color display for chromatin interactions in trackster.
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2012-10-24 11:51:18 -04:00 |
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Dannon Baker
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3318231985
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Merge
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2012-10-24 09:00:30 -04:00 |
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Jeremy Goecks
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557b394918
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Circster, enhancements for chords: (a) adjust chords when datasets added/removed from visualization; (b) use config to color; and (c) enable dynamic addition of chord/interaction datasets.
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2012-10-23 15:41:48 -04:00 |
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Jeremy Goecks
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6609eb8fa5
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Make DiagonalHeatMapTrack compatible with recent refactoring.
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2012-10-23 13:30:26 -04:00 |
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Jeremy Goecks
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f41b3d3883
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Circster: use chords to denote chromosome interactions data.
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2012-10-23 11:06:27 -04:00 |
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Jeremy Goecks
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e99fab99c3
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Enable icon buttons to generate popup menus.
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2012-10-22 18:34:31 -04:00 |
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Jeremy Goecks
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ec3eae321a
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Add chromatin interaction datatype to datatypes.conf, fix bug in data chrint data provider, and enable diagonal heat map track.
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2012-10-22 13:19:09 -04:00 |
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Jeremy Goecks
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d2d7358d2e
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Make trackster View object into a Backbone view.
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2012-10-22 12:33:30 -04:00 |
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Jeremy Goecks
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069092f96b
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Code cleanup in vis framework.
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2012-10-22 10:47:46 -04:00 |
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Jeremy Goecks
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2607d1b3c0
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Pack scripts.
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2012-10-20 16:40:38 -04:00 |
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Jeremy Goecks
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19d968863c
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Circster, cleanup for fetching more data: do not fetch more data for summary tree and use linear function for fetching more bigwig data.
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2012-10-20 16:39:39 -04:00 |
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Jeremy Goecks
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fc7000b8bf
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Circster: code cleanup to remove use of options dictionary.
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2012-10-20 16:25:28 -04:00 |
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Jeremy Goecks
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4161d08f04
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Circster: transition paths when loading more detailed data.
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2012-10-20 16:12:00 -04:00 |
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Jeremy Goecks
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636e398345
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Make Trackster use generic visualization save functionality.
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2012-10-20 13:16:22 -04:00 |
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Jeremy Goecks
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fefa6ac501
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Circster: add programmatic support for removing tracks.
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2012-10-19 21:07:56 -04:00 |
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Jeremy Goecks
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64670ceb98
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Set up track config in BackboneTrack objects and use config in Circster.
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2012-10-19 14:02:23 -04:00 |
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Jeremy Goecks
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9c953192be
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Add backbone model, collection, and view for configuration settings. Pack scripts.
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2012-10-19 11:55:49 -04:00 |
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Jeremy Goecks
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89acc18611
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Circster cleanup: remove track indexes and make renderers into views.
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2012-10-16 13:43:57 -04:00 |
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Jim Johnson
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9d328872fc
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Fix workflow_editor exceptions for multi-input when dragging
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2012-10-16 11:47:57 -05:00 |
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Jeremy Goecks
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d0bdd8c525
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When adding datasets to visualization, pass dbky directly rather than in dict.
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2012-10-16 11:32:55 -04:00 |
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Jeremy Goecks
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be2fb52e6b
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Circster: enable tracks to be added dynamically.
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2012-10-16 11:26:42 -04:00 |
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John Chilton
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5524c060de
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Initial work from JJ on enhancing the workflow editor to allow multiple input data parameters. Workflows containing such connections will now display properly, though they cannot be modified.
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2012-10-16 09:13:32 -05:00 |
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Carl Eberhard
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7c9e899645
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scatterplot.js: incorporate utils/LazyDataLoader.js; pack scripts
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2012-10-15 12:41:32 -04:00 |
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Jeremy Goecks
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ef2c8f54ec
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Viz client-side framework: generalize add_datasets function and change name to select_datasets, general code cleanup, and packed scripts.
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2012-10-12 17:22:51 -04:00 |
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Carl Eberhard
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2180826ea1
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scatterplot.js: fixes after testing; utils/LazyDataLoader.js: basic lazy ajax loading object;
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2012-10-11 17:25:51 -04:00 |
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Jeremy Goecks
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acd0a5d6ec
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Circster: support data indexing and loading for datasets not previously indexed. Also add visual indicator when drawing/loading tracks.
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2012-10-11 10:31:13 -04:00 |
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Carl Eberhard
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8a8c21d482
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scatterplot.js: minor changes; data_providers/basic.py: ensure numeric stats only on numeric columns;
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2012-10-11 10:24:43 -04:00 |
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Carl Eberhard
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d9747a836f
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scatterplot: added stats panel, added chart config panel; dataproviders/basic.py: compute, pass gen. stats in response.meta; base-mvc: fixed bug in chrome LoggableMixin; pack scripts
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2012-10-10 17:55:34 -04:00 |
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Carl Eberhard
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6c39691ecf
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history.js: fix to HistoryView tagging functionality
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2012-10-09 19:10:30 -04:00 |
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Jeremy Goecks
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c2f30dbef9
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Trackster: accurately calculate track/tile heights by clearing previously set height before calculating new height.
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2012-10-09 11:33:02 -05:00 |
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Jeremy Goecks
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b1108b2c00
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Fixes that (a) simplify data providers framework and (b) make it possible to view different trees in the same nexus file.
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2012-10-08 22:33:03 -05:00 |
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Carl Eberhard
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4c77381efe
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history.js: add persistant storage, show prev. opened datasets on page refresh; base-mvc.js: add PersistantStorage object adapter
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2012-10-08 13:27:11 -04:00 |
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