9 Commits

Include renames

Author	SHA1	Message	Date
Nate Coraor	e75f2b0895	Symlink sample configs back to config/	2019-07-08 10:20:01 +02:00
Nate Coraor	404dcbc104	Handle the following files for "installed" galaxy: ... - config/data_manager_conf.xml - config/external_service_types_conf.xml - config/shed_data_manager_conf.xml - config/shed_tool_data_table_conf.xml - config/shed_data_manager_conf.xml - config/tool_data_table_conf.xml - config/workflow_schedulers_conf.xml - tool-data (for shed-installed data tables) shed_* are now created on demand when shed things are installed. Installed Galaxy can now be started from outside the Galaxy root with just a galaxy.ini. Some features will still be broken (static dbkeys, display build sites). Some (dependency resolvers) are broken just because I haven't gotten to fixing paths yet and will be easy to fix, others (dbkeys) are more complicated because of complex paths and relative-to-galaxy-root defaults (in datatypes_conf.xml).	2016-07-07 13:49:27 -04:00
Daniel Blankenberg	55074c8f33	Add Phinch as an external display application. Currently linking to a personal copy of Phinch, since it requires https://github.com/PitchInteractiveInc/Phinch/pull/54	2016-04-01 15:38:53 -04:00
Daniel Blankenberg	0c57453c96	Add vcf.iobio as a display application.	2016-03-15 12:57:47 -04:00
Daniel Blankenberg	46728c5728	Add bam.iobio as a display application.	2016-03-15 12:56:54 -04:00
youri	83bc5b74ff	liftOver.loc was not accessible from local data	2015-08-11 10:58:06 +02:00
Daniel Blankenberg	1260d07a28	Have IGV external display application load a set of links for available genomes via a tool data table that reads a URL (http://igv.broadinstitute.org/genomes/genomes.txt). The manually specified builds links should now be used to add additional builds, or for alias mapping (e.g. hg_g1k_v37-->b37).	2015-02-27 15:50:28 -05:00
Daniel Blankenberg	30f1815658	Load genomes list from data tables for visualizations. Based off of Pull Request: https://bitbucket.org/galaxy/galaxy-central/pull-request/601/load-genomes-list-from-data-tables-for/diff	2015-01-26 15:11:06 -05:00
Nate Coraor	575e7fb804	Move samples configs to config subdirectory.	2014-09-15 11:28:18 -04:00