Wolfgang Maier
bd0f257452
Switch data_source.py to modern tool-provided metadata
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Allows moving all data source tools using the script to profile 20.09.
For more recent profiles data_source.py would have to work outside of
Galaxy's Python environment.
2024-02-08 16:43:39 +01:00
Helena Rasche
646b133bb3
Add EDAM topics to unannotated tools
2020-10-30 17:59:45 +01:00
Nicola Soranzo
ef4f5ccda4
Remove deprecated `interpreter attribute from tools <command>`
2020-03-05 12:53:09 +01:00
Daniel Blankenberg
93c51fa259
Update default dbkey for fly_modencode.xml and bump version.
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dm3 is UCSC for release 5
2015-05-20 12:39:59 -04:00
Martin Cech
182fbd1bc6
fix the data source tools for modendcode with proper URLs
2015-05-19 16:53:25 -04:00
peterjc
fce2184e5b
Make tool version explicit (Job runner would assume 1.0.0)
2015-03-09 15:21:48 +00:00
Daniel Blankenberg
694300ce97
Some reworking of data_source tools and the standard data_source.py script. Remove hard-coded special-case handling of UCSC Table Browser and GBrowse datasource tools; functionality remains, but is now a part of the individual tools' XML configuration files. Auto-detect is now available by providing data_type=auto parameters.
2011-04-21 13:12:10 -04:00
Greg Von Kuster
95ac03c352
Remove the hack I just committed for changing modENCODE fly and worm dbkeys, and translate the values in the tool configs.
2010-05-12 15:18:40 -04:00
Greg Von Kuster
de5de2973c
Force modENCODE worm dbkey to be ce6 and modENCODE fly dbkey to be dm2.
2010-05-12 14:50:25 -04:00
Greg Von Kuster
53363c793e
Add the modENCODEfly and modENCODEworm data source tools.
2010-05-06 19:39:27 -04:00
Wolfgang Maier