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10766 Commits
Author SHA1 Message Date
Alireza Heidari ad3fd44655 Remove and unload jquery.complexify package 2022-01-24 23:04:25 +03:30
Marius van den Beek 374219a912 Merge pull request #13226 from galaxyproject/dependabot/npm_and_yarn/client/nanoid-3.2.0 
Bump nanoid from 3.1.29 to 3.2.0 in /client
 2022-01-24 18:45:27 +01:00
Marius van den Beek def0cfde33 Merge pull request #13205 from galaxyproject/dependabot/npm_and_yarn/client/markdown-it-12.3.2 
Bump markdown-it from 12.2.0 to 12.3.2 in /client
 2022-01-24 18:23:16 +01:00
Marius van den Beek 0f4ffdaece Merge pull request #13217 from guerler/revise_scrolling 
Ensure that jQuery updates drop target locations during dragging
 2022-01-24 18:22:04 +01:00
mvdbeek 64d395862e Merge branch 'release_21.09' into dev 2022-01-24 09:28:08 +01:00
mvdbeek 31f0cb4263 Don't sort array in place, fixes infinite update loop 2022-01-23 13:43:06 +01:00
mvdbeek 036dddc991 Wait for data and datatype before rendering HistoryDatasetsDisplay 2022-01-23 10:48:22 +01:00
mvdbeek 65b3157c02 Search datatype before selecting it 
We now return more datatypes in the list, so bam fell out of the intial
items that select2 displays without scrolling.
 2022-01-23 10:48:22 +01:00
mvdbeek bb2c6ba481 Fix workflow connections for outputs that are not displayed in uploads 
and apply the same fix for tool recommendations.

Fixes https://github.com/galaxyproject/galaxy/issues/13173
 2022-01-23 10:48:21 +01:00
mvdbeek f6ce2f6f5a Merge branch 'release_21.09' into dev 2022-01-22 16:35:43 +01:00
dependabot[bot] 11356cb0eb Bump nanoid from 3.1.29 to 3.2.0 in /client 
Bumps [nanoid](https://github.com/ai/nanoid) from 3.1.29 to 3.2.0.
- [Release notes](https://github.com/ai/nanoid/releases)
- [Changelog](https://github.com/ai/nanoid/blob/main/CHANGELOG.md)
- [Commits](https://github.com/ai/nanoid/compare/3.1.29...3.2.0)

---
updated-dependencies:
- dependency-name: nanoid
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-01-22 00:44:56 +00:00
dependabot[bot] 94bafc5381 Bump log4js from 6.3.0 to 6.4.0 in /client 
Bumps [log4js](https://github.com/log4js-node/log4js-node) from 6.3.0 to 6.4.0.
- [Release notes](https://github.com/log4js-node/log4js-node/releases)
- [Changelog](https://github.com/log4js-node/log4js-node/blob/master/CHANGELOG.md)
- [Commits](https://github.com/log4js-node/log4js-node/compare/v6.3.0...v6.4.0)

---
updated-dependencies:
- dependency-name: log4js
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-01-21 23:22:14 +00:00
Dannon 296b31e524 Merge pull request #13193 from davelopez/fix_wf_invocation_name_overflow 
[21.09] Fix workflow invocation name overflow
 2022-01-21 15:42:18 -05:00
Aysam Guerler 17b034378f Merge pull request #13221 from mvdbeek/dev 
Merge release_21.09 into dev
 2022-01-21 12:56:58 -05:00
John Chilton 4ead1a5569 Merge pull request #13204 from dannon/fix-tool-id-routing 
Bugfix for allowing +'s in tool urls
 2022-01-21 11:37:42 -05:00
mvdbeek f0baddd905 Merge branch 'release_21.09' into dev 2022-01-21 16:38:36 +01:00
davelopez ad9b422f92 Fix column text overflow after wrapping in div 
And slightly enhance switch to history tooltip
 2022-01-21 14:45:56 +01:00
davelopez bac2cc24c4 Move toggle-invocation-details class to expand column 2022-01-21 14:26:24 +01:00
davelopez 407c04d711 Fix tooltip position 
The tooltip was ignoring the text-overflow when the full name was truncated and was positioned in the center of where the full text would be.
Putting the tooltip into a wrapping div seems to solve the issue.
 2022-01-21 13:44:28 +01:00
davelopez 36a0f56184 Truncate history name too 2022-01-21 13:42:08 +01:00
davelopez de633e9b52 Fix column index in unit tests 
After adding a new "first" column for expanding
 2022-01-21 12:43:14 +01:00
davelopez 5e603a9856 Add explicit row expand button 
- Makes more obvious that the row can be expanded.
- Allows to display the full name in the tooltip when truncated.
 2022-01-21 12:28:34 +01:00
davelopez 71e3fd4a68 Add min-width to table 
This will prevent the workflow name column to completely dissapear in small resolutions
 2022-01-21 12:26:40 +01:00
guerler c7ce234f2c Add comment indicating that legacy 3rd party jquery plugin has been modified 2022-01-21 02:41:49 -05:00
guerler 72d56160bc Force jquery drag handler to update positions of drop targets while dragging 2022-01-20 22:11:53 -05:00
Dannon Baker 953ca8cdf1 Fix a bug with info box appearing unnecessarily 2022-01-20 14:45:06 -05:00
Dannon Baker 47a755f525 Trigger update when toggling switch 2022-01-20 13:55:37 -05:00
Dannon Baker bd40980c3b Add a showAllRunning option for the admin jobs view 2022-01-20 13:49:00 -05:00
guerler d49958064f Access scroll panel through canvas manager 2022-01-20 13:21:02 -05:00
guerler 2a005df018 Separate qunit test cases for data and parameter input terminals 2022-01-20 16:20:32 +01:00
guerler f7fb4ede55 Remove currently unused options from qunit terminal creation helpers 2022-01-20 16:20:32 +01:00
guerler b5f35c76c2 Add test to validate correct mapping of parameter input terminals 2022-01-20 16:20:32 +01:00
guerler dce483e7f5 Call setMapOver routine in input parameter terminals to detect mapped collections 2022-01-20 16:20:31 +01:00
Dannon 410b4e125f Merge pull request #13206 from galaxyproject/dependabot/npm_and_yarn/client/engine.io-4.1.2 
Bump engine.io from 4.1.1 to 4.1.2 in /client
 2022-01-20 09:24:14 -05:00
Marius van den Beek 594a999652 Merge pull request #13189 from guerler/parameter_collection 
Allow mapping of collection outputs to parameter inputs
 2022-01-20 09:56:10 +01:00
guerler 1725ad9c27 Separate qunit test cases for data and parameter input terminals 2022-01-19 22:16:04 -05:00
dependabot[bot] 128dd4af0f Bump follow-redirects from 1.14.4 to 1.14.7 in /client 
Bumps [follow-redirects](https://github.com/follow-redirects/follow-redirects) from 1.14.4 to 1.14.7.
- [Release notes](https://github.com/follow-redirects/follow-redirects/releases)
- [Commits](https://github.com/follow-redirects/follow-redirects/compare/v1.14.4...v1.14.7)

---
updated-dependencies:
- dependency-name: follow-redirects
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-01-19 23:01:06 +00:00
dependabot[bot] 7a4d6f0ad4 Bump engine.io from 4.1.1 to 4.1.2 in /client 
Bumps [engine.io](https://github.com/socketio/engine.io) from 4.1.1 to 4.1.2.
- [Release notes](https://github.com/socketio/engine.io/releases)
- [Changelog](https://github.com/socketio/engine.io/blob/4.1.2/CHANGELOG.md)
- [Commits](https://github.com/socketio/engine.io/compare/4.1.1...4.1.2)

---
updated-dependencies:
- dependency-name: engine.io
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-01-19 23:01:04 +00:00
dependabot[bot] 18e7614c51 Bump markdown-it from 12.2.0 to 12.3.2 in /client 
Bumps [markdown-it](https://github.com/markdown-it/markdown-it) from 12.2.0 to 12.3.2.
- [Release notes](https://github.com/markdown-it/markdown-it/releases)
- [Changelog](https://github.com/markdown-it/markdown-it/blob/master/CHANGELOG.md)
- [Commits](https://github.com/markdown-it/markdown-it/compare/12.2.0...12.3.2)

---
updated-dependencies:
- dependency-name: markdown-it
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-01-19 23:00:52 +00:00
Dannon Baker aacde56a7c Use decode-uri-component package here, too. 2022-01-19 15:44:42 -05:00
Dannon Baker 037a37524d For tool form url parsing, assume if the parameters have a + in the 
version that it is already unencoded and don't decode again.
 2022-01-19 15:22:25 -05:00
Dannon Baker 7c64408c39 Tentative fix for allowing +'s in urls. 2022-01-19 13:31:29 -05:00
davelopez b920bfb7a9 Set table columns widths as suggested in comments 2022-01-19 18:36:50 +01:00
davelopez 9ba9783bd0 Use break-word on overflow-wrap 2022-01-19 18:35:26 +01:00
guerler 2ed8cf644d Consistently parse content id for workflow modules when updating states 2022-01-19 18:18:27 +01:00
mvdbeek d3d6c60705 Fix embedding subworkflow 2022-01-19 15:49:05 +01:00
mvdbeek d5b31ee55a Fix tool id not getting updated on tool update 2022-01-19 14:46:31 +01:00
guerler 97c5f8d3cf Properly replace tool version in tool identifer string 2022-01-19 12:34:19 +01:00
davelopez 60cd5fc279 Fix workflow invocation name overflow 
This will force wrapping the name of the workflow when it overflows
 2022-01-19 11:44:58 +01:00
guerler 1764f134ed Remove currently unused options from qunit terminal creation helpers 2022-01-19 00:59:31 -05:00