John Chilton
aaa97c62a0
Workflow editor backbonification - make Node a model.
2014-04-10 15:46:07 -05:00
John Chilton
5d94853116
Workflow editor backbonification - refactor some update_field_data presentation logic into NodeView.
2014-04-10 15:46:07 -05:00
John Chilton
5d82a000ca
Workflow editor backbonification - move terminal presentation logic from NodeView to DataOutputView.
2014-04-10 15:46:07 -05:00
John Chilton
b9106b807a
Workflow editor backbonification - move terminal presentation logic from NodeView to DataInputView.
2014-04-10 15:46:07 -05:00
John Chilton
066f343a2c
Workflow editor backbonification - OutputTerminalView to Backbone.View event binding.
2014-04-10 15:46:07 -05:00
John Chilton
2a77d89a66
Workflow editor backbonification - InputTerminalView to Backbone.View event binding.
2014-04-10 15:46:07 -05:00
John Chilton
b6ad39d461
Workflow editor backbonification - add OutputTerminalView.
...
Add unit tests for OutputTerminalView.
2014-04-10 15:46:07 -05:00
John Chilton
0aaa9f97ce
Workflow editor backbonification - add InputTerminalView.
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Add unit tests for new view.
2014-04-10 15:46:06 -05:00
John Chilton
1d85636c6a
Workflow editor backbonification - add view for output data view.
2014-04-10 15:46:06 -05:00
John Chilton
052348ed49
Workflow editor backbonification - add view for output callout.
2014-04-10 15:46:06 -05:00
John Chilton
7ab5f6a3bc
Workflow editor backbonification - add DataInputView.
2014-04-10 15:46:06 -05:00
John Chilton
ab63eec1c6
Workflow editor backbonification - add NodeView.
...
Including unit tests.
2014-04-10 15:46:06 -05:00
Carl Eberhard
8f179efe71
Metrics: initial commit of client side logger
2014-04-10 16:28:16 -04:00
Martin Cech
4bea6249f3
forgotten files for previous commit
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data libraries: API refactoring and improvements; backbone decoupling; role UI first implementation
2014-04-10 15:07:01 -04:00
Martin Cech
0dd3187401
data libraries: API refactoring and improvements; backbone decoupling; role UI first implementation
2014-04-10 15:05:33 -04:00
John Chilton
86ee4fdabf
Simplify enable_output_terminal and enable_output_terminal in workflow editor.
...
These functions were taking in a single element and then looping through it. I hope this is not some intententional jQuery pattern to change the value of 'this' I don't quite understand and is just a remnant of when some loop over inputs was on the inside of this function or some other such refactoring.
2014-04-10 13:31:48 -05:00
John Chilton
69ddb38557
Refactor interaction between workflows JS and editor JS for adding nodes.
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Add abstraction into editor for use by galaxy.workflow.js to hide some editor details from workflow code and reduce duplication between add_node_for_tool and add_node_for_module.
2014-04-10 13:31:47 -05:00
John Chilton
9b0bbb0dab
Remove unused variable?
2014-04-10 13:31:46 -05:00
Carl Eberhard
d7dda26c58
Remove debugging statements
2014-04-08 14:14:17 -04:00
Jeremy Goecks
9d64557de5
Trackster: update jQuery selector so that all tool inputs are updated on change rather only <input> elements. Pack script.
2014-04-08 12:07:50 -04:00
Jeremy Goecks
910fc94c94
Pack script.
2014-04-07 12:22:01 -04:00
Jeremy Goecks
5edebad3e6
Visualization client-side framework: use simpler/faster/boundary-condition insensitive calculation for extracting subsets of reference sequence data.
2014-04-07 12:21:43 -04:00
Jeremy Goecks
086e37c557
Trackster: only draw incomplete features when displaying features, not coverage data. Pack script.
2014-04-04 16:33:06 -04:00
Jeremy Goecks
18c2e3fc71
Trackster: fixes for creating and resizing composite line tracks.
2014-04-03 14:33:48 -04:00
Martin Cech
1758f3d63a
libraries: removed unused and deprecated function
2014-04-02 17:21:06 -04:00
Martin Cech
5f928cd92d
libraries: more refactoring fun; full UI for permissions handling; repainting from cache
...
should be ready for stable
2014-04-02 17:18:51 -04:00
Martin Cech
8d2a8f9b7b
libraries: more refactoring; basic UI based on role handling; attaching to global Galaxy object; persistent lib preferences
2014-04-02 11:07:04 -04:00
Jeremy Goecks
579ebf5157
Circster fixes: (a) make compatible with new config object; (b) fix formatting issue with negative values; and (c) clean up debugging statements. Pack scripts.
2014-04-02 10:15:54 -04:00
Jeremy Goecks
fee4cb7333
Trackster: CompositeTrack fixes for recent refactoring. Pack script.
2014-04-02 09:12:07 -04:00
Jeremy Goecks
573456d475
Trackster: show drawn reads across all tiles by pooling incompletely drawn reads and drawing them at the end.
2014-04-01 16:21:32 -04:00
Jeremy Goecks
e2f56b50f2
Trackster: drawing performance improvement. Packed scripts.
2014-04-01 15:09:30 -04:00
Jeremy Goecks
75d9496e10
Genome data providers: (a) organize imports and (b) implement random and nth read iterators to downsample deep coverage regions. Use nth read iterator by default because it is the fastest.
2014-04-01 10:30:12 -04:00
Martin Cech
a1e9cf6f07
data libraries, don't allow showing deleted libraries to non-admins; provide information what actions user is allowed to do on library;
2014-03-31 15:36:49 -04:00
Martin Cech
14760aba92
added is_admin to the javascript user object for UI rendering purposes;
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modified is_admin_user in masthead config to be consistent with standard is_admin check
2014-03-31 12:55:06 -04:00
Carl Eberhard
b1b00a9562
Fix base-mvc SessionStorageModel to require an id; Show alert on disabled sessionStorage
2014-03-31 12:08:21 -04:00
Carl Eberhard
2bb923e892
Fix to add spacing in hda-edit deleted/hidden info boxes between added sentences
2014-03-31 11:21:14 -04:00
Martin Cech
37650b8275
libraries storage prefs: name default prefs for libraries
2014-03-28 14:33:27 -04:00
Martin Cech
4931d4757c
libraries: some serious refactoring, caching of subviews; base-mvc initialAttrs default setting (empty object)
2014-03-28 14:17:57 -04:00
Carl Eberhard
91338a4ce2
Fix: use preventDefault when trying to add display or visualizations to galaxy.frame
2014-03-27 13:19:11 -04:00
Carl Eberhard
212e7d1f5d
Fix to 7155334: add user model to AMD chain for history panel
2014-03-27 12:57:54 -04:00
Aysam Guerler
152fa0db00
Trackster: Fix trackster button in tabular data viewer
2014-03-26 23:00:42 -04:00
Jeremy Goecks
e329872433
Pack script.
2014-03-26 22:15:12 -04:00
Jeremy Goecks
597b88a195
Trackster: (a) default read track block colors to gray in order to show variants; (b) do not set default height of variant track.
2014-03-26 22:14:10 -04:00
Jeremy Goecks
ebaa1c39d3
Visualization JS: fix incorrect method call. Pack script.
2014-03-26 17:53:07 -04:00
Jeremy Goecks
f0e4046998
Pack scripts.
2014-03-26 17:39:58 -04:00
Jeremy Goecks
cba7a6638f
Trackster: fix offset bug that was rendering bases incorrectly.
2014-03-26 17:37:03 -04:00
Jeremy Goecks
27e607a5e2
Fix initialization of boolean values in client-side config object.
2014-03-26 15:39:14 -04:00
Jeremy Goecks
ecef013a11
Trackster: set maximum label length.
2014-03-26 15:12:39 -04:00
Jeremy Goecks
6b6ec0fcfb
Trackster: remove reference to left_offset in painters because it is not needed.
2014-03-26 14:46:29 -04:00
Jeremy Goecks
0d7b0ce91d
Trackster: consolidate read painters.
2014-03-26 13:42:54 -04:00
John Chilton