Jeremy Goecks
04ff53c4de
Pack script.
2010-02-22 07:43:12 -05:00
Jeremy Goecks
d752edcae0
Added functionality for creating links on pages: (1) existing links are editable and (2) can create in-page, named anchors.
2010-02-22 07:42:07 -05:00
Kanwei Li
51c7ec8fb3
trackster:
...
- Refactor
- Focus on new browser text
- Fixed linetrack bug when switching chroms
2010-02-19 17:54:44 -05:00
James Taylor
2ef54f5bd3
Fix jquery script packing
2010-02-17 13:54:44 -05:00
Jeremy Goecks
881c86cb50
Update to workflow UI: (1) made options menu; (2) created styles for item metadata; and (3) put item annotations in own metadata form below tool form.
2010-02-17 12:25:17 -05:00
Jeremy Goecks
a2c20d2f69
Code cleanup and script packing.
2010-02-16 18:58:05 -05:00
James Taylor
0f5cc8f34f
Temporarily revent jquery and jquery.tipsy to 1.3 versions
2010-02-15 17:39:06 -05:00
Kanwei Li
4ca80890c5
new tipsy works with jQuery 1.4
2010-02-14 16:03:54 -05:00
Kanwei Li
7f0f868e7d
upgrade to jquery 1.4.1
2010-02-12 15:17:36 -05:00
Kanwei Li
3b84d9c361
- Fix Safari crashing bug for async in-place editing
...
- Refactor galaxy.base.js
- Escape history name in renaming template
2010-02-10 18:25:32 -05:00
Anton Nekrutenko
c972968931
A slightly better closing icon for screencast overlays
2010-02-10 15:13:46 -05:00
Kanwei Li
5d0fffb8c9
trackster:
...
- Refactor element creation code
- Can delete tracks
- Can reorder tracks
2010-02-10 12:17:38 -05:00
James Taylor
2d1afdbb09
Update tooltips using a modified version of tipsy, these can be used on any page if you include the tipsy script. Also, updating some styles and icons for tags.
2010-02-09 04:16:26 -05:00
Jeremy Goecks
87505038fd
Bug fixes to slug editing, tooltips, and click-to-edit elements.
2010-02-08 09:03:07 -05:00
Kanwei Li
33708a881b
trackster:
...
- New interface for new track browsers
- Saving shows progress bar
- Can now add tracks async
- Switching dbkeys is now async
2010-02-05 19:08:37 -05:00
Jeremy Goecks
27bc9fdafe
Pack script.
2010-02-05 15:29:01 -05:00
Jeremy Goecks
2d32da4815
Sanitize HTML in annotations and update annotations via ajax to show sanitation results.
2010-02-05 15:28:03 -05:00
Jeremy Goecks
6e63c3a38f
UI improvements for history panel and tags: (1) added icons for tags, annotations; (2) added tooltips for editable text; (3) added tooltips for tags.
2010-02-05 14:18:37 -05:00
Jeremy Goecks
aa04ae725f
Make slugging editing possible on IE.
2010-02-04 16:23:32 -05:00
Jeremy Goecks
d9d7a29840
Added slug editing. Also updated/added HTML escaping on display templates.
2010-02-04 10:11:50 -05:00
Jeremy Goecks
f100d00ce6
Added UI support for annotating histories, HDAs, workflows, and workflow steps. Numerous small changes as well: (a) added an 'edit workflow attributes' to workflow editor; (b) added 'Edit tags and Annotation' area to history panel; (c) added generic javascript method to ajax text updates. Also fixed public URL column bug.
2010-02-01 16:30:18 -05:00
Kanwei Li
cba2c2220c
trackster:
...
- Can save configs
- Make track configs look like history items instead of tool configs
- Small performance tweaks
- Implemented "Add Track" grid (doesn't actually add track yet)
Grids:
- Lowercase when sorting so that we sort strings case-independent
- Can click on text to toggle appropriate checkbox
2010-01-29 17:10:34 -05:00
Kanwei Li
8939f5fe76
trackster: add jquery ui files
2010-01-26 16:47:06 -05:00
Kanwei Li
ef5cff784a
trackster:
...
- Fixed incorrect drawing of thick strands
- Linetrack: can now set min and max values for y-axis
- Featuretrack: can set color for label and block
- Drawing delays 50ms so that scrolling quickly across browser does not load everything travelled through
- Fixed another memory leak in arraytree provider
- Made intron tracks lighter in color
2010-01-26 16:37:25 -05:00
Jeremy Goecks
2526935d49
Integrate 'sharing via email' functionality into sharing framework so that all item sharing/viewing/publishing/security/tagging functionality uses the same code base and the same UI.
2010-01-23 15:28:25 -05:00
Kanwei Li
98322d64e2
trackster: fix thick region display bug, stacking bugs, enable right-panel
2010-01-14 17:49:20 -05:00
Anton Nekrutenko
a4361dcce1
Modification of pileup filter behavior, bases not different from the references are included in the report as well. Also changed the image for closing screencast panels. A new icon is urgently needed.
2010-01-14 14:07:05 -05:00
Kanwei Li
4ca761e9cc
trackster: support BAM visualization with samtools, automatically enable tracks for any datatype with "get_track_type" defined
2010-01-07 15:45:15 -05:00
Kanwei Li
b31024b494
Quickies: add close button, fix window height to fit flowplayer
2010-01-05 16:32:30 -05:00
Jeremy Goecks
eac13df795
Pack autocomplete script.
2010-01-04 15:25:47 -05:00
Jeremy Goecks
f83b0ac0ab
Fix autocomplete IE bug. Fix enables autocomplete to work on IE and hence dbkey select box to work on IE.
2010-01-04 15:20:29 -05:00
Kanwei Li
5b95f28aad
Show tooltips in workflows
2009-12-22 18:49:34 -05:00
James Taylor
7d9dde7235
Packed scripts
2009-12-17 14:32:44 -05:00
Jeremy Goecks
2271da0025
Added individual and community tags to pages. More refactoring of tagging code as well.
2009-12-14 22:12:03 -05:00
James Taylor
f7fdf28381
Visualization tweaks, grid links work again (not perfect though), tracks now line up with no extra shims, now shows scrollbar for track area
2009-12-14 21:14:53 -05:00
James Taylor
0b26d5b8dc
Fix various popup button issues. When there is no popup, button will be correctly sized (no extra space on right). When there is only a popup, entire button area is clickable. Combo buttons are mostly unchanged except that the popup click area is larger (anything to the right of the separator bar. An image is used so the arrow has a consistent shape and size across browsers.
2009-12-14 12:17:01 -05:00
Jeremy Goecks
7bcfda8b9c
Better interface for selecting build/dbkey. Uses progressive javascript to replace select box with a search box + select list. Fixes #7 .
2009-12-09 13:15:33 -05:00
Jeremy Goecks
76914152e9
Added 'annotate history' functionality to pages. To accomplish this, refactored tagging from pure javascript to progressive javascript. Also fixed unicode and grid filtering bugs.
2009-12-08 18:49:06 -05:00
Kanwei Li
fb00e2b7a2
trackster: load block data incrementally, huge performance gains from drawing smaller tiles
2009-11-19 18:55:35 -05:00
Kanwei Li
9efa130e6f
revert to sqlite default in universe.sample
2009-11-18 13:45:53 -05:00
Jeremy Goecks
7519604261
'Insert history link' functionality added to pages. A user can select 1 or more histories and create links that point to a view of each history.
2009-11-17 19:06:42 -05:00
Jeremy Goecks
978261b496
Initial AJAX support for grids. AJAX support is not integrated into grids yet, but there are mako templates for AJAXed grids. AJAXed grids can be used for grids that do not use operations.
2009-11-13 16:34:32 -05:00
Jeremy Goecks
6dcf078f18
Comment out Galaxy tools from page editor until functional.
2009-11-06 19:11:30 -05:00
Jeremy Goecks
fbf5616dbc
Refactored grid code to (a) generalize numerous column types and (b) fully support multiple, arbitrary, multi-column categorical and free-text queries. Python code provides support for TextColumn and TagColumn objects, and grids_common.mako provides support for programmatically creating free text and categorical filtering UIs. History and HDA grids have been updated to use the refactored code.
2009-11-06 19:04:13 -05:00
Kanwei Li
8f049dcb7e
trackster: using overlapping tiles, fix feature names being cut off on the left
2009-11-05 17:25:56 -05:00
Kanwei Li
f3ab760b63
trackster: much greater resolution for line tracks (might still need to tweak BLOCK_SIZE), fixed stacking issue in feature tracks for features sharing same name)
2009-11-03 19:16:01 -05:00
Jeremy Goecks
7c9ba39113
Pack recently modified scripts.
2009-11-03 13:00:36 -05:00
Jeremy Goecks
ec3674f5f0
Improved search functionality for history grid: (a) generic free text search box and (b) advanced search using name, tag, deleted status, and shared status.
2009-11-03 12:58:13 -05:00
Kanwei Li
961a647fed
trackster: fix window resizing, wrong tiles being displayed
2009-10-30 21:55:17 -04:00
Kanwei Li
17a82e78d3
trackster: fixed browser crashing (were drawing huge canvas tiles because of resolution restriction), implemented simple LRU
2009-10-29 18:28:11 -04:00
Jeremy Goecks