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71 Commits
Author SHA1 Message Date
Nicola Soranzo 77d8dac19a Various doc fixes 
- Merge invisible `doc/source/admin/reports.md` into
  `doc/source/admin/reports.rst`
- Misc fixes and cleanups
 2020-02-07 02:37:57 +00:00
Martin Cech c38f944255 knowing rst, this wouldn't work 2019-12-02 15:46:46 -05:00
Martin Cech 3f1419be63 apply @nsoranzo's review comments 
include style, imports, docs
 2019-12-02 15:42:33 -05:00
Peter Selten 341d04d749 Merge branch 'docs-data-types' of github.com:selten/galaxy into docs-data-types 2019-11-28 21:28:27 +01:00
Peter Selten f473ad9d70 Merge branch 'dev' of https://github.com/galaxyproject/galaxy into docs-data-types 2019-11-28 21:28:03 +01:00
Nicola Soranzo 79c6880c6b Remove unused Docker Swarm options 
Follow-up on https://github.com/galaxyproject/galaxy/pull/3863 .
 2019-09-22 22:52:05 +01:00
selten 7afd9b403e Add note that Tool Shed datatypes are deprecated 2019-08-28 21:34:35 +02:00
Peter Selten 73417c5af5 Add futher information and chane some naming and comments 2019-08-28 19:58:32 +02:00
seltenandNicola Soranzo 385752bf2c Update doc/source/dev/data_types.md 
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
 2019-08-28 19:26:57 +02:00
seltenandNicola Soranzo 69f72079a9 Update doc/source/dev/data_types.md 
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
 2019-08-28 19:26:18 +02:00
seltenandNicola Soranzo 323fcbe13d Update doc/source/dev/data_types.md 
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
 2019-08-28 19:25:59 +02:00
seltenandNicola Soranzo c76865081c Update doc/source/dev/data_types.md 
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
 2019-08-28 19:25:44 +02:00
seltenandNicola Soranzo 95109fb902 Update doc/source/dev/data_types.md 
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
 2019-08-28 19:25:23 +02:00
seltenandNicola Soranzo 857d40ba12 Update doc/source/dev/data_types.md 
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
 2019-08-28 19:24:55 +02:00
seltenandNicola Soranzo 00bd2e775f Update doc/source/dev/data_types.md 
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
 2019-08-28 19:24:36 +02:00
seltenandNicola Soranzo ea0b4002cd Update doc/source/dev/data_types.md 
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
 2019-08-28 19:23:59 +02:00
seltenandNicola Soranzo 49e10f7672 Update doc/source/dev/data_types.md 
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
 2019-08-28 19:23:48 +02:00
seltenandNicola Soranzo 9941f0eb4d Update doc/source/dev/data_types.md 
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
 2019-08-28 19:23:37 +02:00
seltenandNicola Soranzo 1af5f476ee Update doc/source/dev/data_types.md 
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
 2019-08-28 19:23:27 +02:00
seltenandNicola Soranzo 66e6f1bfd1 Update doc/source/dev/data_types.md 
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
 2019-08-28 19:23:18 +02:00
seltenandNicola Soranzo d5063d68a0 Update doc/source/dev/data_types.md 
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
 2019-08-28 19:23:07 +02:00
seltenandNicola Soranzo 4cd64768ac Update doc/source/dev/data_types.md 
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
 2019-08-28 19:22:58 +02:00
seltenandNicola Soranzo c9ea566221 Update doc/source/dev/data_types.md 
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
 2019-08-28 19:22:46 +02:00
seltenandNicola Soranzo 5c627909d0 Update doc/source/dev/data_types.md 
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
 2019-08-28 19:22:20 +02:00
selten 8610fa8cab Merge branch 'dev' of https://github.com/galaxyproject/galaxy into docs-data-types 
# Conflicts:
#	doc/source/dev/index.rst
 2019-08-28 16:27:53 +02:00
selten 94c57ace95 Update index.rst 2019-08-28 16:19:49 +02:00
selten fdb0d8721b Create data_types.md 2019-08-28 16:18:55 +02:00
selten 4d325460b0 Change 'ToolShed' to 'Tool Shed' 2019-08-24 12:14:21 +02:00
Peter Selten 53ad227750 Fix documentation more, spread data managers documentation over multiple lines so it's easier to read when editing. 2019-08-24 11:56:47 +02:00
selten 333950ec46 Update faq.rst 2019-08-23 21:28:03 +02:00
selten 9dc36d36c5 Update build runner documentation 2019-08-23 21:23:32 +02:00
selten 7448a11c39 Small changes to the data managers docs 2019-08-23 21:04:50 +02:00
selten f34b29fca3 Update documentation for clarity on docs.galaxyproject.org 2019-08-23 09:49:17 +02:00
Peter Selten bf0cc5cd28 Migrate documentation to docs website for data managers 2019-06-28 22:12:09 +02:00
selten b2cfb961f2 Add remove operation to data managers and document data managers in regular Galaxy docs. 2019-06-28 20:02:37 +02:00
Dannon Baker a9b1a0454d Update documentation for IES 2019-05-08 11:59:16 -04:00
Dannon Baker fd75ce5e43 Standardize (at least a step forward) access to IES lib via bundle 2019-05-08 10:59:34 -04:00
Dannon Baker 38c2a80904 Update IES to use bundleEntries-based JS entrypoint to avoid having to ship an extra file; incremental step towards removing require here, too. 2019-05-07 16:44:15 -04:00
Nicola Soranzo 46b3539a35 Fix doc bugs 
Use proper cross-referencing with `:doc:`.
 2019-01-14 22:45:34 +00:00
Sergey Golitsynskiy 0bd861aec7 Code style improvement to previous commit 2018-12-21 13:23:41 -05:00
Sergey Golitsynskiy 5d8e0bb049 Correct code error in 'build job runner' tutorial 
When  __init__ is called, **kwargs (most likely) will not contain
the 'runner_param_specs' key. And if so, calling update() on
kwargs['runner_param_specs'] will cause an error. Check if key exists,
then update or create.
 2018-12-21 12:42:25 -05:00
Dannon Baker db67cd2f56 Merge remote-tracking branch 'upstream/dev' into webpack_4_minimal_flat 2018-10-15 14:51:41 -04:00
Nicola Soranzo 91a3954307 Index `finding_and_improving_slow_code` page in dev docs 2018-10-12 09:57:46 +01:00
Dannon Baker f116cb8de8 Drop more grunt cruft 2018-10-11 11:35:26 -04:00
thobalose 3b3215138f Updated GIE build docs. 2018-10-10 15:06:32 +02:00
thobalose 848196732d Updating GIE build docs. 2018-10-10 15:06:07 +02:00
mvdbeek 2e5bbad353 Clarify the last section 2017-09-03 19:47:29 +02:00
mvdbeek 634f7dcd39 Add a small howto on profiling galaxy code 2017-09-03 19:38:56 +02:00
E Rasche 2f992d90ae Rebase 2017-06-01 16:43:21 +00:00
Martin Cech 66a02b6af1 modify our docs in preparation for restructuring 
start moving admin content from old wiki
 2017-03-10 12:06:24 -05:00