Nicola Soranzo
9b4de72ca6
Fix all E722 errors and ignore E741
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Introduced in flake8 3.5.0
Fix import order.
2017-10-24 11:29:09 +01:00
Nate Coraor
206f5ec034
Merge remote-tracking branch 'origin/release_17.09' into dev
2017-10-20 14:43:43 -04:00
Nate Coraor
1f6df5580b
Fix the spinner for the GIE container readiness check.
2017-10-19 13:56:21 -04:00
Nate Coraor
2a2534789d
Merge remote-tracking branch 'origin/release_17.09' into dev
2017-10-18 15:06:22 -04:00
Evgeny Anatskiy
60b5abfa3e
fix TDT's dependency
2017-10-17 15:46:54 +02:00
Dannon Baker
f6b2e1b92c
Roll charts building into package scripts, simplify makefile.
2017-10-16 10:44:21 -04:00
Dannon Baker
5707e95d48
Update webpack config, rebuild charts.
2017-10-16 10:27:16 -04:00
Dannon Baker
f709ddcfe6
Add requirejs config to cachebust IE require'd files.
2017-09-27 14:53:24 -04:00
Dannon Baker
c235382cee
No need for this keep_alive invocation after all; removes the commented out code.
2017-09-27 08:15:06 -04:00
Dannon Baker
40900d76a9
Re-enable keepalive, build client.
2017-09-27 07:54:27 -04:00
Nate Coraor
180bfe7184
Treat timeouts and errors the same, except that timeouts step the
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ajax timeout of the next request. Also fixes for toastr messages.
2017-09-26 16:41:50 -04:00
Nate Coraor
7edeedd7fe
Additional GIE spinning fixes for when the error condition is not a
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timeout.
2017-09-26 16:41:50 -04:00
Nate Coraor
04b03b2853
Make the URL spinner actually work.
2017-09-22 16:45:21 -04:00
Nate Coraor
4f9d5df34f
WIP a bunch of GIE javascript that probabaly won't work
2017-09-22 13:23:55 -04:00
Eric Rasche
508fdb9d2b
Merge pull request #3330 from bgruening/hicbrowser
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HiCBrowser as Galaxy IE
2017-09-08 14:18:18 +02:00
Max Schaefer
43ddd47320
Add missing var declarations.
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In all these cases, a variable was not declared to be a local using `var` (and hence was implicitly interpreted as a global variable), but all uses of that variable were preceded by a definition within the same function, suggesting that the variable was, in fact, meant to be local, not global.
2017-08-16 15:22:42 +01:00
anuprulez
27e7da9406
Fix bug: 4247 in search overlay
2017-07-27 16:14:54 +02:00
Caleb
b2bb88a41d
remove extraneous js files
2017-07-17 12:29:07 -05:00
Caleb
2d13f9b843
downgrade to unipept-visualizations.es5.js for compatibility with older browsers
2017-07-14 13:06:53 -05:00
Caleb Easterly
9445acaa6e
fix jj's link
2017-07-13 10:07:24 -05:00
Caleb
c39a82f76c
remove license
2017-07-13 10:02:31 -05:00
Caleb
2fbf9afc64
fix treemap being too wide
2017-07-13 08:27:44 -05:00
Caleb
2a49f1f62a
add unipept triple visualization
2017-07-12 17:32:48 -05:00
anuprulez
efc877ab29
Adding showBootstrap feature for Phylocanvas viz
2017-07-05 18:44:38 +02:00
pvanheus
00928743bf
Correct name of neo4j datatype class
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Its neo4j.Neo4jDB: https://github.com/galaxyproject/galaxy/blob/dev/lib/galaxy/datatypes/neo4j.py#L89
2017-06-23 23:25:09 +02:00
John Chilton
27e843bfc1
Merge pull request #4213 from bgruening/improve_search_plugin
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Improve search plugin
2017-06-22 15:49:00 -04:00
Martin Cech
9cec283b5a
make the overlay icon toggleable, change wording
2017-06-22 11:28:32 -04:00
Thoba Lose
009f44c25f
using sanbi-sa image.
2017-06-22 15:00:03 +02:00
Thoba Lose
3461b26540
Merge branch 'dev' of github.com:galaxyproject/galaxy into neo4j-ie
2017-06-21 21:19:37 +02:00
anuprulez
19231b73f3
Reduce opening of search overlay to one step - just click on the magnifier
2017-06-20 19:33:49 +02:00
Dannon Baker
d779622138
Merge with current dev.
2017-06-14 10:40:02 -04:00
Thoba Lose
842d14a0e6
Upgrade IE to Neo4j:3.1
2017-06-13 14:48:42 +02:00
Dannon Baker
ae76200b08
Merge remote-tracking branch 'upstream/release_17.05' into dev
2017-06-06 15:52:49 -04:00
Martin Cech
0b1eaf3269
fix - remove extra slash
2017-06-06 14:27:42 -04:00
Evgeny Anatskiy
96d03c7c35
pass tool version along with the id
2017-05-18 19:31:08 +02:00
Martin Cech
5eadd4842d
Merge branch 'release_17.05' into dev
2017-05-16 15:55:16 -04:00
Eric Rasche
5e880815ad
Use galaxy.root by default
2017-05-14 16:02:09 +00:00
Dannon Baker
197e90c662
Replace second line (was the jpg) in upload to demonstrate multiple upload.
2017-05-12 10:56:06 -04:00
Dannon Baker
c789c53f0c
Fix minor typo in history tour
2017-05-12 10:08:33 -04:00
Dannon Baker
a2fd8ac035
Remove GalaxyLogo upload from history intro tour
2017-05-12 10:06:40 -04:00
Martin Cech
ef0809c2eb
remove unnecessary whitespace fixes
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from otherwise untouched files
2017-05-05 16:14:35 -04:00
Dannon Baker
c42941da04
Remove global Toastr addition, allow external requires through standard js-app entrypoint.
2017-05-05 12:08:01 -04:00
Nate Coraor
4b3a361a88
Update Jupyter image to 17.05
2017-05-02 12:07:10 -04:00
Evgeny Anatskiy
ce017c3fec
upload conditional test datasets
2017-05-01 21:04:48 +02:00
John Chilton
6201c61d72
Add a note about use_volumes to Jupyter and RStudio GIEs.
2017-05-01 12:38:05 -04:00
John Chilton
9bc24aeef0
Update rstudio to match additional hid handling of Jupyter.
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Ping @erasche - does this work? I'm not sure how rstudio handles the existing DATASET_HID.
2017-04-28 12:14:45 -04:00
John Chilton
5a6e53f728
Rework Jupyter IE for additional_ids handling.
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- Add a new option ``use_volumes`` to the Docker config.
- If using volumes, do nothing differently.
- If not using volumes, set ADDITIONAL_IDS in the environment for the IE itself to fetch (requires https://github.com/bgruening/docker-jupyter-notebook/pull/17 ).
2017-04-28 12:11:10 -04:00
Evgeny Anatskiy
542e396ddf
introduce two new entry points: onload and tool-menu
2017-04-26 22:02:46 +02:00
Evgeny Anatskiy
47a5f17089
many improvements
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- show warning messages (not errors)
- upload test datasets with a correct type according to the tool's .xml file (no 'auto' detection)
- add more checks to improve the overall stability
- fix tour messages
- other bugfixes
2017-04-26 20:49:46 +02:00
Evgeny Anatskiy
ed4fa0425e
fix a bug when a tour coudn't be ended after executing a tool
2017-04-26 17:30:27 +02:00
Nicola Soranzo