Greg Von Kuster
2dc1c17a2d
Cleaned up code for cleaning up histories and datasets, should now be faster and require much less memory. Other miscellanwoud code cleanup. Added sample database config options to config file.
2008-01-16 19:37:30 +00:00
Greg Von Kuster
01378424b4
New reports app server and 1st report showing disk usage for dataset file system - still need to mess with styles a bit.
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Also fixed update_dataset_size script and delete deprecatd random_intervals code file.
2008-01-11 21:24:21 +00:00
Greg Von Kuster
6d80665988
Added file_size column to dataset table, requires db schema alteration:
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alter table dataset add column file_size numeric(15,0)
Also added new script update_dataset_size.py
2008-01-08 16:19:25 +00:00
James Taylor
4b88be5e25
1) Modified index page so progressive loading works better for slower
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connections
2) Added a script for packing the javascripts, everything is now repacked
with yui-compressor (the packed versions are slightly large, but they
gzip better resulting in an overall reduction).
2007-12-11 19:30:03 +00:00
James Taylor
a50b8007ef
Splitting out UCS2 and UCS4 eggs for linux. Run scripts check
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waht python is available and use the right directory. Factored
path stuff out of shell scripts into a shared 'setup_paths.sh'.
2007-12-06 01:27:33 +00:00
Daniel Blankenberg
74a9f2ecbf
Modify metadata update script to update metadata of all tabular based files. Special case for interval files (interval,
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bed) to not override interval specific assignments.
2007-10-17 15:23:09 +00:00
Greg Von Kuster
5aa8cb1e23
Changed the call from Tabular().set_meta() to dataset.set_meta() since we now have a better approach to setting meta data for tabular data types.
2007-09-28 18:42:57 +00:00
Daniel Blankenberg
ed964dd043
Add dataset filename table. Filenames can now be assigned, setting the readonly flag on a dataset filename object
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will prevent Galaxy from deleting the file when the dataset is purged. Copies of datasets (such as when sharing a
history), no longer copy file contents.
Database changes required:
CREATE TABLE dataset_filename (
id INTEGER NOT NULL,
create_time TIMESTAMP DEFAULT current_timestamp,
update_time TIMESTAMP DEFAULT current_timestamp,
filename TEXT,
extra_files_path TEXT,
readonly BOOLEAN,
PRIMARY KEY (id)
);
ALTER TABLE dataset ADD filename_id INTEGER;
2007-09-24 19:42:09 +00:00
Daniel Blankenberg
42a90ea1f0
Script to ensure that MAF metadata is set.
2007-08-30 14:46:52 +00:00
Daniel Blankenberg
b873d64859
Scripts to update metadata to the latest model.
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Be sure to backup databases before executing.
2007-08-22 20:04:40 +00:00
Daniel Blankenberg
86651d8a66
Add a commandline util to cleanup abandoned histories and purge deleted datasets.
2007-07-31 21:40:14 +00:00
Ian Schenck
fda163bbe8
Data validation. Please please please take a look and give me some input.
2007-03-12 18:35:03 +00:00
Ian Schenck
496ba08a30
Validating on upload. Still need to make template display a peek or something.
2007-03-09 21:02:23 +00:00
Ian Schenck
2ddab5819a
Script that will run like a tool for each dataset generated. Is this in the right place? P.S. this stuff isn't final.
2007-03-09 19:45:29 +00:00
James Taylor
2c4c20436e
Cleaning up modules. Still a few stragglers that can't be easily eggified.
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EVERYTHING we depend on should eventually be under the galaxy module or
packaged in eggs to avoid namespace problems.
2006-11-15 18:27:21 +00:00
Greg Von Kuster