 Kanwei Li
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98322d64e2
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trackster: fix thick region display bug, stacking bugs, enable right-panel
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2010-01-14 17:49:20 -05:00 |
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Anton Nekrutenko
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a4361dcce1
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Modification of pileup filter behavior, bases not different from the references are included in the report as well. Also changed the image for closing screencast panels. A new icon is urgently needed.
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2010-01-14 14:07:05 -05:00 |
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Kanwei Li
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4ca761e9cc
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trackster: support BAM visualization with samtools, automatically enable tracks for any datatype with "get_track_type" defined
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2010-01-07 15:45:15 -05:00 |
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Kanwei Li
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b31024b494
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Quickies: add close button, fix window height to fit flowplayer
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2010-01-05 16:32:30 -05:00 |
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Jeremy Goecks
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eac13df795
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Pack autocomplete script.
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2010-01-04 15:25:47 -05:00 |
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Jeremy Goecks
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f83b0ac0ab
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Fix autocomplete IE bug. Fix enables autocomplete to work on IE and hence dbkey select box to work on IE.
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2010-01-04 15:20:29 -05:00 |
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Kanwei Li
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5b95f28aad
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Show tooltips in workflows
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2009-12-22 18:49:34 -05:00 |
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James Taylor
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7d9dde7235
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Packed scripts
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2009-12-17 14:32:44 -05:00 |
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Jeremy Goecks
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2271da0025
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Added individual and community tags to pages. More refactoring of tagging code as well.
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2009-12-14 22:12:03 -05:00 |
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James Taylor
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f7fdf28381
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Visualization tweaks, grid links work again (not perfect though), tracks now line up with no extra shims, now shows scrollbar for track area
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2009-12-14 21:14:53 -05:00 |
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James Taylor
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0b26d5b8dc
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Fix various popup button issues. When there is no popup, button will be correctly sized (no extra space on right). When there is only a popup, entire button area is clickable. Combo buttons are mostly unchanged except that the popup click area is larger (anything to the right of the separator bar. An image is used so the arrow has a consistent shape and size across browsers.
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2009-12-14 12:17:01 -05:00 |
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Jeremy Goecks
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7bcfda8b9c
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Better interface for selecting build/dbkey. Uses progressive javascript to replace select box with a search box + select list. Fixes #7.
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2009-12-09 13:15:33 -05:00 |
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Jeremy Goecks
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76914152e9
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Added 'annotate history' functionality to pages. To accomplish this, refactored tagging from pure javascript to progressive javascript. Also fixed unicode and grid filtering bugs.
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2009-12-08 18:49:06 -05:00 |
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Kanwei Li
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fb00e2b7a2
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trackster: load block data incrementally, huge performance gains from drawing smaller tiles
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2009-11-19 18:55:35 -05:00 |
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Kanwei Li
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9efa130e6f
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revert to sqlite default in universe.sample
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2009-11-18 13:45:53 -05:00 |
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Jeremy Goecks
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7519604261
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'Insert history link' functionality added to pages. A user can select 1 or more histories and create links that point to a view of each history.
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2009-11-17 19:06:42 -05:00 |
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Jeremy Goecks
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978261b496
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Initial AJAX support for grids. AJAX support is not integrated into grids yet, but there are mako templates for AJAXed grids. AJAXed grids can be used for grids that do not use operations.
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2009-11-13 16:34:32 -05:00 |
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Jeremy Goecks
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6dcf078f18
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Comment out Galaxy tools from page editor until functional.
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2009-11-06 19:11:30 -05:00 |
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Jeremy Goecks
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fbf5616dbc
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Refactored grid code to (a) generalize numerous column types and (b) fully support multiple, arbitrary, multi-column categorical and free-text queries. Python code provides support for TextColumn and TagColumn objects, and grids_common.mako provides support for programmatically creating free text and categorical filtering UIs. History and HDA grids have been updated to use the refactored code.
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2009-11-06 19:04:13 -05:00 |
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Kanwei Li
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8f049dcb7e
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trackster: using overlapping tiles, fix feature names being cut off on the left
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2009-11-05 17:25:56 -05:00 |
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Kanwei Li
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f3ab760b63
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trackster: much greater resolution for line tracks (might still need to tweak BLOCK_SIZE), fixed stacking issue in feature tracks for features sharing same name)
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2009-11-03 19:16:01 -05:00 |
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Jeremy Goecks
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7c9ba39113
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Pack recently modified scripts.
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2009-11-03 13:00:36 -05:00 |
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Jeremy Goecks
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ec3674f5f0
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Improved search functionality for history grid: (a) generic free text search box and (b) advanced search using name, tag, deleted status, and shared status.
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2009-11-03 12:58:13 -05:00 |
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Kanwei Li
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961a647fed
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trackster: fix window resizing, wrong tiles being displayed
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2009-10-30 21:55:17 -04:00 |
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Kanwei Li
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17a82e78d3
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trackster: fixed browser crashing (were drawing huge canvas tiles because of resolution restriction), implemented simple LRU
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2009-10-29 18:28:11 -04:00 |
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James Taylor
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d91c3fbfeb
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Specify color for feature tracks in one place (eventually should be configurable)
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2009-10-28 15:09:05 -04:00 |
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Kanwei Li
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82087715e0
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trackster: y-axis labels for linetracks, thin/thick blocks are correct for featuretracks, messages when data is loading and being indexed
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2009-10-27 22:34:30 -04:00 |
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James Taylor
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153c87359d
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Fix display of stranded features without blocks in trackster. Hacky.
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2009-10-27 13:28:25 -04:00 |
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James Taylor
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ae5c232b10
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Tweaking trackster UI to fit Galaxy interface a little better (broke something with spacing though)
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2009-10-23 18:49:18 -04:00 |
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Kanwei Li
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233b0c15f1
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trackster: fix blocks display, navigation issues, now displays strand direction arrows
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2009-10-23 14:57:08 -04:00 |
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Kanwei Li
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d684b0d656
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trackster: caching goes by zoom levels, greatly improving zooming performance. revamped UI
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2009-10-20 16:46:12 -04:00 |
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Ross Lazarus
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2dc106df97
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moved the rgGRR svg scripts to static/scripts/tools/rgenetics and decreased chattiness in genetics.py
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2009-10-15 19:01:07 -04:00 |
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Kanwei Li
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0f4b33c60e
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pack the new scripts for rgenetics
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2009-10-14 18:43:38 -04:00 |
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Ross Lazarus
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7349e8fbfd
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adding three LGPL ECMA script helpers for rgGRR interactive SVG.
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2009-10-14 15:47:58 -04:00 |
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Kanwei Li
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74e6735d2c
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trackster: caching works, faster loops, displays exon blocks, passes JSLint
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2009-10-12 19:00:39 -04:00 |
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Jeremy Goecks
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4c401cddc1
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Enables viewing of an importable/sharable history. Using the syntax /history/view?id=<encoded_history_id> produces a page that renders a history for viewing. A user need not be logged in to view the history.
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2009-10-08 13:38:32 -04:00 |
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Kanwei Li
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f2cebd4366
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refactor trackster, better failure message
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2009-10-06 23:47:08 -04:00 |
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Kanwei Li
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ccc06268f9
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trackster: feature tracks auto-resize to fit data, prepare for LRU cache
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2009-10-01 14:01:53 -04:00 |
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Kanwei Li
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e43907785d
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Trackster: only attempt dataset conversion once, UI/parsing improvements
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2009-09-29 21:50:44 -04:00 |
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Kanwei Li
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c556f857b7
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trackster now supports BED files
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2009-09-25 18:47:40 -04:00 |
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Kanwei Li
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cb3fcbbb51
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minor trackster
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2009-09-23 19:11:12 -04:00 |
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Kanwei Li
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9d7a14f765
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trackster: natural sort for chroms list, disable zooming when no data, can click on labels when selecting datasets
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2009-09-23 17:32:16 -04:00 |
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Kanwei Li
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9fcb61e39c
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new trackster lands
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2009-09-22 21:51:11 -04:00 |
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Jeremy Goecks
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9d34116b8b
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tags made available in history grid
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2009-09-21 10:39:58 -04:00 |
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James Taylor
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b2c9c284de
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More work on server side for tracks. Now uses converters instead of indexers. A wiggle to array_tree converter is provided. Still need to purge indexer stuff. This will not work without new bx egg (or likely at all)
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2009-09-18 15:15:39 -04:00 |
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Jeremy Goecks
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61a9255da8
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html escaping for tags
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2009-09-17 12:45:36 -04:00 |
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Jeremy Goecks
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3d557a9a45
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(1) Unicode support for tagging and (2) added tagging_common mako file to support creation and standardization of tagging elements across all pages.
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2009-09-11 14:57:02 -04:00 |
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Jeremy Goecks
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ae25081e72
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Another pass on tagging: fixed queries and minor UI issues and reintroduced tagging fields to templates.
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2009-08-31 17:19:33 -04:00 |
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Jeremy Goecks
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2fc10839cf
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Packed JS files for tagging
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2009-08-28 15:44:28 -04:00 |
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Jeremy Goecks
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bb0736e136
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JS files for tagging
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2009-08-28 15:31:06 -04:00 |
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