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Commit Graph
19407 Commits
Author SHA1 Message Date
Björn Grüning 206b729337 Merge pull request #19048 from mvdbeek/invocation_metrics_api 
Add job metrics per invocation
 2024-11-06 20:02:39 +01:00
Laila Los 946d2ffa31 split vega related components into lazy loaded bundle 2024-11-06 17:26:01 +01:00
Marius van den Beek 360b72a82a Improve user_id description, set email where needed 2024-11-06 11:42:18 +01:00
mvdbeek 3a6fdf24fb Allow searching jobs in public histories for job cache 2024-11-06 11:42:18 +01:00
mvdbeek ec6831e14b Merge branch 'release_24.1' into dev 2024-11-06 11:33:46 +01:00
mvdbeek b1691c56f8 Rerender on resize 2024-11-05 17:19:55 +01:00
Arash 35db3c33db No escape needed for '/' in slug input 2024-11-05 16:04:53 +01:00
Arash 17c962a66e Refactor valid slug to just exclude /:?# characters 2024-11-05 16:04:52 +01:00
mvdbeek 39a7ed2669 Decrease value parsing repetition, add peakMemory 2024-11-04 18:32:13 +01:00
mvdbeek 6b94267a88 Enable grouping by workflow step 2024-11-04 17:53:17 +01:00
mvdbeek bcf212dab4 Add basic boxplot 2024-11-04 17:53:17 +01:00
mvdbeek e5b300b9c1 Add job metrics per invocation 2024-11-04 17:53:17 +01:00
davelopez 92e1f199a6 Add support for deferred datasets in visualizations 2024-11-01 10:18:14 +01:00
mvdbeek 58ff6d20d0 Merge branch 'release_24.0' into release_24.1 2024-10-31 15:18:20 +01:00
Martin Cech 8557fcb8a6 avoid possible negative offset 2024-10-31 13:28:18 +01:00
Ahmed Awan 2cae82cfa9 use a watcher to fetch invocation id just once 2024-10-30 13:27:01 -05:00
Ahmed Awan eb65bb8764 [24.0] Fetch invocation id only once on the job info page 
... instead of polling while the job is non terminal; we only need the id once.

Fixes https://github.com/galaxyproject/galaxy/issues/18921
 2024-10-29 12:47:17 -05:00
Ahmed Awan 28596d3066 Add a filter for labels (tags) in Tool Search 
Fixes https://github.com/galaxyproject/galaxy/issues/19069
 2024-10-29 11:39:43 -05:00
Dannon 6586093d96 Merge pull request #19060 from galaxyproject/dependabot/npm_and_yarn/client/http-proxy-middleware-2.0.7 
Bump http-proxy-middleware from 2.0.6 to 2.0.7 in /client
 2024-10-29 10:24:33 -04:00
Dannon fe2c01de28 Merge pull request #19055 from ahmedhamidawan/add_galaxy-upload_to_uploader 
Add `galaxy-upload` link to `UploadModal`
 2024-10-29 10:02:56 -04:00
Marius van den Beek 1ebd078043 Merge pull request #18985 from jmchilton/workflow_request 
Allow recovering a normalized version of workflow request state from API
 2024-10-28 13:17:08 -04:00
dependabot[bot] da82ed1214 Bump http-proxy-middleware from 2.0.6 to 2.0.7 in /client 
Bumps [http-proxy-middleware](https://github.com/chimurai/http-proxy-middleware) from 2.0.6 to 2.0.7.
- [Release notes](https://github.com/chimurai/http-proxy-middleware/releases)
- [Changelog](https://github.com/chimurai/http-proxy-middleware/blob/v2.0.7/CHANGELOG.md)
- [Commits](https://github.com/chimurai/http-proxy-middleware/compare/v2.0.6...v2.0.7)

---
updated-dependencies:
- dependency-name: http-proxy-middleware
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
 2024-10-25 10:59:48 +00:00
davelopez 746f4c0bac Add selenium test for dataset datatype auto-detection 2024-10-25 12:43:05 +02:00
Ahmed Awan f518ef292b add <HelpText> to the link 2024-10-24 10:28:30 -04:00
Ahmed Awan 3d6579b948 [WIP] Add galaxy-upload link to UploadModal 2024-10-24 10:08:13 -04:00
Nicola Soranzo 051c5ab751 Merge branch 'release_24.1' into dev 2024-10-22 16:18:00 +01:00
John Chilton 639d3025b3 Merge pull request #18979 from mvdbeek/workflow_landing_improvements 
Workflow landing improvements
 2024-10-22 07:47:12 -04:00
mvdbeek d5879db0c0 Add selenium tests for workflow landing 2024-10-20 18:34:57 -04:00
mvdbeek 9608202357 Parameterize public and secret props in workflow landing component 
Chose to make the url query param `client_secret` to match the API
parameter.
 2024-10-20 18:34:57 -04:00
mvdbeek 4f497a30f1 Separate private and public landing requests 
Private requests must be claimed before use. Public / Anonymous requests
only depend on the public flag, so anoymous users can create private
landing requests and authenticated users can create public requests.

Tests should cover all of these scenarios.
 2024-10-20 18:34:56 -04:00
Dannon c5d89e53a4 Merge pull request #18946 from guerler/add_ngl 
Migrate NGL viewer to npm package
 2024-10-18 09:10:06 -04:00
Dannon Baker 62e9b34b42 Fix typo in hasLoadingCollectionElementsError computed property 
As it was, false was being used as an index instead of the fallback
return.
 2024-10-16 21:03:59 -04:00
mvdbeek b342cf5979 Merge branch 'release_24.1' into dev 2024-10-16 19:06:17 +02:00
Marius van den Beek e15b6bd63a Merge pull request #19008 from itisAliRH/workflow-card-annotation-bleedidng 
[24.1] Fix Workflow card controllers and indicators bleeding
 2024-10-16 17:07:57 +02:00
Dannon 3e15aa07ec Merge pull request #18887 from maartenschermer/user-preferences-remote-users 
Enable extra user preferences for remotely authorized users
 2024-10-16 11:01:00 -04:00
Alireza Heidari 79aab5951c Enhance WorkflowCard header layout with relative positioning 
Added relative positioning to the workflow card header to improve layout control and ensure proper alignment of child elements.

Fixes #19006
 2024-10-16 15:29:08 +02:00
Dannon Baker d489cc1f71 Revert back to explicitly pre-staging static, though per discussions we probably want to isolate this to static/dist 2024-10-15 17:39:23 -04:00
guerler 7710bb4248 Install ngl from npm package 2024-10-15 19:54:01 +03:00
guerler 63019c006b Remove ngl from static build plugin ids 2024-10-15 19:54:01 +03:00
mvdbeek 8d3b2ae5a9 Redirect user to login/registration if anonymous 
Also fixes error handling.
 2024-10-15 15:25:44 +02:00
mvdbeek 67fff6ac73 Allow using TRS ids as workflow id in workflow landing requst 2024-10-15 15:25:38 +02:00
John Chilton 019ab2e5a2 Rebuild schema for workflow request model changes. 2024-10-15 09:12:05 -04:00
Alireza HeidariandDavid López 7df9f7c66d 🛠️: refactor OAuth2 callback to handle errors and missing credentials and show errors in CreateUserFileSource 
Co-authored-by: David López <46503462+davelopez@users.noreply.github.com>
 2024-10-14 15:16:45 +02:00
Alireza Heidari 7d2229d9a6 🎨: improve the loading alert and show error when there is an error while redirecting to the file source provider in FileSources/CreateInstance 2024-10-14 15:16:44 +02:00
Alireza Heidari e6eaa3b157 🎨: add template name to the title in EditInstance 2024-10-14 15:16:44 +02:00
Alireza Heidari fd92a05881 🎨: add template name to the title in CreateForm 2024-10-14 15:16:43 +02:00
Alireza Heidari 329f91e968 🛠️: refactor FontAwesome icon import in ConfigTemplate/InstanceDropDown 2024-10-14 15:16:43 +02:00
Alireza Heidari 83656bfc98 🛠️: refactor FontAwesome icon import in ConfigurationTestItem 2024-10-14 15:16:42 +02:00
John Chilton 1736eb17d8 Rework user file/object store for changes to client fetch arch. 2024-10-14 15:16:42 +02:00
John Chilton edc5bc2a8f Allow oauth2 file sources with Dropbox initial implementation. 2024-10-14 15:16:41 +02:00