guerler
1ece93fe38
Use const for visualizations variable in dataset edit view element
2019-08-14 16:51:31 -04:00
Peter Selten
ebb4572bd8
Update to set the extension by default
2019-08-14 20:54:17 +02:00
John Chilton
47d46c626e
Merge pull request #8452 from erasche/faster-quota
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Replace in-python quota calc with a SQL query
2019-08-14 14:40:12 -04:00
John Chilton
404bf6bbc0
Merge pull request #8458 from bgruening/pgp
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add pgp and osw filetype as used in OpenSWATH experiments
2019-08-14 14:38:52 -04:00
Nicola Soranzo
561f3cd377
Add pointer to client/README.md ( #8457 )
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Add pointer to client/README.md
2019-08-14 17:08:52 +01:00
Helena Rasche
16c13ad62e
refresh session
2019-08-14 16:41:10 +02:00
Daniel Blankenberg
8444da7bc7
Merge pull request #8 from bgruening/it
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migrating a few more interactive environments to interactive tools
2019-08-14 10:32:24 -04:00
Helena Rasche
887aae2ab3
Refactor into model
2019-08-14 16:15:49 +02:00
Björn Grüning
851ef559b3
add osw datatype
2019-08-14 16:11:02 +02:00
Daniel Blankenberg
6953bfae06
update migration script version
2019-08-14 10:09:23 -04:00
Daniel Blankenberg
764e28f812
Merge branch 'dev' of https://github.com/galaxyproject/galaxy into realtimetools
2019-08-14 10:08:44 -04:00
Daniel Blankenberg
0ba4ca5175
cleanup comments
2019-08-14 10:08:40 -04:00
Helena Rasche
58f4f65a4a
new method
2019-08-14 16:08:04 +02:00
Helena Rasche
c501c092a5
replace both with pgcalc
2019-08-14 16:07:24 +02:00
Björn Grüning
d3a578b71a
add pgp filetype as used in OpenSWATH experiments
2019-08-14 16:01:57 +02:00
Dannon Baker
877bd322d6
Add pointer to client/README.md to address ' https://github.com/galaxyproject/galaxy/commit/8bb2b6bfbcac89910ec6b5cc58e23243571ab879#commitcomment-34259049 '
2019-08-14 09:59:55 -04:00
Helena Rasche
52bd23cacf
revert changes to original, move to pgcalc
2019-08-14 15:55:51 +02:00
Marius van den Beek
a86ed8a064
Merge pull request #8414 from jmchilton/record_job_tool_version
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Record Galaxy version job was created with.
2019-08-14 08:11:38 -04:00
Marius van den Beek
0c3e21fdd7
Merge pull request #8455 from selten/gitlab-error-reporting-update
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Implement #8183 for further GitLab integration.
2019-08-14 07:30:53 -04:00
Björn Grüning
c34fce8a5e
add some more comments
2019-08-14 09:36:27 +02:00
Björn Grüning
2fd4c13aba
enhance documentation for developers
2019-08-14 09:32:05 +02:00
Bjoern Gruening
24c7c76379
remove complexity from ipython wrapper, not needed for this version
2019-08-14 09:15:09 +02:00
selten
f14be51cfb
Change for linting
2019-08-14 00:13:42 +02:00
Peter Selten
5a5fac6374
Add file extensions when downloading from data libraries. Both in the compressed and uncompressed datasets.
2019-08-13 23:57:53 +02:00
Peter Selten
72678dfb18
Implement #8183 for further GitLab integration. Allow toggling of the proxy functionality, add automatic assignment to the last person that commited to the repository.
2019-08-13 22:17:40 +02:00
Daniel Blankenberg
5ed5ff6d49
Merge branch 'dev' of https://github.com/galaxyproject/galaxy into realtimetools
2019-08-13 14:47:53 -04:00
Daniel Blankenberg
0e5892c5ca
Update galaxy.yml.realtime example with outputs_to_working_directory: true
2019-08-13 14:45:39 -04:00
guerler
454cca05b8
Disable visualizations button for history datasets if visualizations are disabled in configuration
2019-08-13 11:21:59 -04:00
Helena Rasche
7830c54a60
rewrite query again
2019-08-13 16:20:02 +02:00
Björn Grüning
01c23ce705
Merge pull request #75 from abretaud/it_askoko
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Fixes for askomics IT
2019-08-13 15:53:40 +02:00
Anthony Bretaudeau
22edfcc11e
fixes for askomics IT
2019-08-13 15:07:11 +02:00
Helena Rasche
686e912097
fix linting errors
2019-08-13 14:40:49 +02:00
Helena Rasche
4976e77957
Replace in-python quota calc with a SQL query
2019-08-13 14:10:47 +02:00
Marius van den Beek
5ebfb6a4da
Merge pull request #8451 from bernt-matthias/topic/fix-drmaa-memstatement
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fix memory statement for drmaa (SGE/UNIVA)
2019-08-13 07:51:43 -04:00
M Bernt
d303bf72dc
fix memory statement for drmaa (SGE/UNIVA)
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The environment variable `SGE_HGR_h_vmem` turns out to be the
total memory for all slots (cores).
In the original implementation I was unfortunatelly tricked by the
fact that the ressouce request parameter `-l h_vmem` needs to be
specified per core.
2019-08-13 11:00:35 +02:00
Björn Grüning
986b0baa71
Merge pull request #73 from blankenberg/patch-1
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Fix websockets in interactive_tool_bam_iobio.xml
2019-08-13 08:48:48 +02:00
Daniel Blankenberg
5655ace083
Fix websockets in interactive_tool_bam_iobio.xml
2019-08-12 15:41:23 -04:00
guerler
626fbdd5b3
Fix comment in config schema for visualization visibility option
2019-08-12 15:22:47 -04:00
guerler
21e347f911
Hide saved visualizations grid if visualizations visibile config is set to false
2019-08-12 15:16:43 -04:00
guerler
40ea2f695f
Add configuration option to hide visualizations from masthead
2019-08-12 15:12:19 -04:00
Björn Grüning
717d94997c
Merge pull request #72 from blankenberg/patch-1
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Add API_KEY, GALAXY_URL, and fix HISTORY_ID envars
2019-08-12 19:04:28 +02:00
Daniel Blankenberg
29e1173f6c
Add API_KEY, GALAXY_URL, and fix HISTORY_ID envars
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in interactive_tool_juypter_notebook.xml
2019-08-12 12:23:38 -04:00
Martin Cech
1ba763aea7
add Matthias Bernt to committers group
2019-08-12 08:32:14 -04:00
Bjoern Gruening
3689d857df
some small changes
2019-08-11 21:28:04 +02:00
Bjoern Gruening
04b1e8f79c
add a bunch of ITs
2019-08-11 16:42:49 +02:00
Bjoern Gruening
b7c6b1896c
fix lint
2019-08-09 22:18:19 +02:00
Bjoern Gruening
bc61761dc1
Add assert for n_lines. This can be used in tool and workflow testing.
2019-08-09 22:00:17 +02:00
John Chilton
04f196439d
Merge pull request #8431 from natefoo/fix-manage-db
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Fix config file finding for the manage_db script
2019-08-09 14:56:53 -04:00
John Chilton
19134aeece
Merge remote-tracking branch 'galaxyproject/dev' into installable-config
2019-08-09 13:52:29 -04:00
John Chilton
95b2256664
Lint fix.
2019-08-09 13:52:13 -04:00
guerler