Dannon Baker
930fe2fa61
Swap remote user logout to actually follow galaxy internal logout procedure and then redirect. Also fix logic for user dropdown -- it was preventing users from seeing stuff that was actually available before.
2014-08-20 12:55:32 -04:00
Aysam Guerler
d995301098
ToolForm: Add data selector, dynamic column selector and checkboxes, extends json content for basic parameters
2014-08-19 15:01:57 -04:00
Dannon Baker
09f2a6967d
Update to jquery1.11.1. This resolves at least one issue related to submit listeners not being attached in iframes, causing tool form failures for tools using conditional parameters like single/paired end reads, default/advanced parameter sets, and so on.
2014-08-19 12:47:34 -04:00
Dannon Baker
ec8d5dfec0
Merged in martenson/galaxy-central-marten (pull request #451 )
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UI + API for library, folder, library dataset and dataset permissions
2014-08-19 11:55:40 -04:00
Carl Eberhard
d3b51aea39
UI, History: add copy method to model; fill out history collection; pack scripts
2014-08-15 09:58:15 -04:00
Jeremy Goecks
2e9b7623f0
Code cleanup: semicolons and identity rather than equality.
2014-08-14 17:14:46 -04:00
Jeremy Goecks
fd5c19bf9f
Readd data module that is needed to display dataset contents in Scratchbook.
2014-08-14 17:04:06 -04:00
Jeremy Goecks
6872db6649
Remove unused code from client-side visualization library.
2014-08-14 16:41:37 -04:00
Carl Eberhard
346ff61251
Fix to 3179b324e9d5: remove debugging statements
2014-08-14 14:19:33 -04:00
Carl Eberhard
66faed9670
(pack scripts)
2014-08-14 14:16:34 -04:00
Carl Eberhard
43425d0b0a
Paired collection creator: add option to remove file extensions from pair names (note: will not change any manually changed names)
2014-08-14 14:16:07 -04:00
Carl Eberhard
e488d64629
Fix to 83c74e7d67f5: open regex tutorial in new tab
2014-08-14 12:21:11 -04:00
Carl Eberhard
45d1883700
Paired collection creator: use regex string matching for dataset filtering (by default - we'll see if that's the right choice), extract ajax error handler
2014-08-14 12:17:28 -04:00
Aysam Guerler
5a3741ab3c
Use floating instead of float as member id, pack code
2014-08-14 11:21:37 -04:00
Carl Eberhard
ca4e8ade92
QA, history panel: better error details: full url, ajax data, Raven/Sentry id if available; galaxy-app-base: add global listeners
2014-08-14 10:57:41 -04:00
Aysam Guerler
1799e4d5ee
Add tool form basics, refactor ui libraries, add alternative tool form template
2014-08-13 13:53:07 -04:00
Carl Eberhard
cee979bff6
Paired collection creator: better notifications, style tweaks
2014-08-13 13:43:09 -04:00
John Chilton
d698c25f6e
Merge latest stable.
2014-08-13 11:14:34 -04:00
Carl Eberhard
2354033521
Fix to 264657d: make infomessage and persistent across states; Style tweaks
2014-08-13 10:03:29 -04:00
Martin Cech
aab4d9ba91
Merge
2014-08-12 17:40:09 -04:00
Martin Cech
7fb7c25efe
library tweaks, help buttons, refactoring,
2014-08-12 17:39:36 -04:00
Carl Eberhard
5ec0562d53
Datset list item: add resubmitted message; pack scripts
2014-08-12 13:56:26 -04:00
Carl Eberhard
39aa86e36d
QA, casperjs: fix selectors changed in 7005608
2014-08-12 11:42:03 -04:00
Carl Eberhard
205c1ce638
History panel: clean up and documentation
2014-08-12 10:45:26 -04:00
Carl Eberhard
2d4e2a7523
History & collections: client-side file and class renaming: - li: readonly list item view, - li-edit: editable list item view, - primary identity first (eg. hda-*), - moved hda/hdca into history directory; Fix bug for dataset URLs
2014-08-12 09:38:08 -04:00
Martin Cech
3e8b4df81f
Merge
2014-08-11 14:38:22 -04:00
Martin Cech
8ca101e84b
initial implementation of library dataset versioning API and UI
2014-08-11 14:38:06 -04:00
Jeremy Goecks
fde948ff4d
Trackster: fix location of gap line and read-pair connector line.
2014-08-11 11:18:46 -04:00
Carl Eberhard
0c540cdd43
HDA/Collections client-side refactoring for drill down view
2014-08-11 11:07:34 -04:00
Jeremy Goecks
163866b06e
Trackster: refine label track position calculation.
2014-08-09 15:38:33 -04:00
John Chilton
b79ed5931d
Merge next-stable.
2014-08-07 09:36:41 -04:00
John Chilton
03ade2b298
Pack scripts.
2014-08-07 09:36:18 -04:00
John Chilton
4d5f0deebf
Relax BibTeX parsing and accept header to handle figshare DOIs.
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For instance 10.6084/m9.figshare.979190 reported by Michael Crusoe. JavaScript parser didn't like @data entries produced by figshare and when requesting the entry dx.doi.org returns a 403 response for type accept type text/bibliography, also allowing application/x-bibtex fixes this. Interestingly dx.doi.org throws 500 exceptions if application/x-bibtex is the only acceptable type or appears first for some other DOIs.
2014-08-07 09:35:43 -04:00
John Chilton
c05cf525c7
Bugfix: Deal with BibTeX fields in a case insensitive fashion.
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Would have thought the parser would have done this already - oh well.
2014-08-07 09:35:43 -04:00
Martin Cech
a505ab2ab6
fix for bug that removed the empty folder message when sort was clicked
2014-08-06 17:20:59 -04:00
Martin Cech
5c315852c2
fix for library row staying in edit mode after being deleted if the 'include_deleted' was unchecked
2014-08-06 15:22:19 -04:00
Martin Cech
6c6f7b3acc
Merge
2014-08-06 12:40:17 -04:00
Martin Cech
9b48b505a1
shortening of long desc/synopsis of libraries, button with library information available within folders
2014-08-06 12:39:43 -04:00
John Chilton
41d95a903a
Merge next-stable.
2014-08-06 11:20:43 -04:00
John Chilton
7250bdd4c2
Pack scripts.
2014-08-06 11:20:14 -04:00
John Chilton
2892c6f9f8
Fixup citation rendering for DOI resolution failures.
2014-08-06 11:19:48 -04:00
Jeremy Goecks
870f3c4e51
Trackster: stabilize tile boundary calculations so that tiles do not overlap or yield visual artifacts.
2014-08-06 10:28:01 -04:00
John Chilton
51306cc343
Merge next-stable.
2014-08-06 09:37:23 -04:00
John Chilton
947ac3d2bf
Pack scripts.
2014-08-06 09:37:08 -04:00
John Chilton
e5d1910529
Fix-up citation related GUI.
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Was displaying warning message about history citations being potentially incomplete for tools - which if they have annotated citations we should assume they are complete.
2014-08-06 09:36:30 -04:00
Martin Cech
d5840a601c
bugfix showiong permissions of the upper folder insted of the selected one
2014-08-05 14:37:18 -04:00
Martin Cech
0a7e616453
Merge
2014-08-05 12:24:13 -04:00
Martin Cech
e51d3b27cf
permission API for folders, libraries, library datasets/datasets close to finish
2014-08-05 12:23:44 -04:00
John Chilton
64915e9716
Merge next-stable.
2014-08-04 15:02:01 -04:00
Jeremy Goecks
f158a4e447
Trackster: fix single-pixel gap bug in quantitative track display.
2014-08-04 14:50:28 -04:00
Dannon Baker