 Dave Bouvier
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962be8d8ec
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Remove sam_fa_indices.loc.sample from tool-data. Update migration xml to the correct revisions of cufflinks repositories.
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2013-10-01 15:49:08 -04:00 |
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Nate Coraor
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812aebdd62
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Backout af20b15f7eda, these changes will be reapplied after tools using the sam_fa_indices data table have been migrated to the Tool Shed in their original state and updated to use the new table format.
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2013-07-30 12:44:05 -04:00 |
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Nicola Soranzo
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70996cfb3d
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Add new loc file for SAMtools indexes to support genome variants
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2013-04-18 19:25:55 +02:00 |
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Dave Bouvier
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917d5a72e8
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Migrated lastz and bowtie tools to the tool shed. Added a target_file feature to the tool dependency installation process.
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2012-11-26 10:18:47 -05:00 |
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Jeremy Goecks
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1774b76b32
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Add entry for Tophat2 indices to tool data table.
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2012-06-04 09:07:19 -04:00 |
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Jeremy Goecks
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7c40df458e
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Skeleton wrapper for Bowtie2.
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2012-04-26 15:28:17 -04:00 |
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Daniel Blankenberg
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8de943a46a
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Update tool data tables for GATK.
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2011-12-05 12:32:02 -05:00 |
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Daniel Blankenberg
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8986dc2c81
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Add SAMTools mpileup.
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2011-11-21 16:30:34 -05:00 |
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Daniel Blankenberg
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74c5e42ecd
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GATK tools will now use gatk_picard_indexes data table.
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2011-10-31 09:41:09 -04:00 |
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Kelly Vincent
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20f77b2a71
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Added color-space Tophat wrapper
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2011-06-24 16:55:43 -04:00 |
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Kelly Vincent
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1182a659ae
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Fix circular references between Picard and SRMA entries in data tables sample file
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2011-04-25 11:10:45 -04:00 |
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Kelly Vincent
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0354a3f661
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Added picard_index.loc.sample file and changed data tables so that both picard and srma tools look in picard_index.loc instead of srma_index.loc
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2011-04-22 15:09:45 -04:00 |
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Dannon Baker
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668d03ba7d
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Initial commit of Mosaik and Freebayes.
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2011-02-23 14:01:58 -05:00 |
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Kelly Vincent
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76b3cb5844
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Added BWA color space wrapper; fixed names of FASTQ test files to indicate data type
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2011-01-12 12:13:54 -05:00 |
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Daniel Blankenberg
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b9d790af55
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Add CCAT ChIP-seq peak/region caller.
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2011-01-03 11:15:29 -05:00 |
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Kelly Vincent
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1dae87b797
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Modifed tophat wrapper to work with data tables and fixed problem with index path; also got tests working
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2010-11-17 12:01:45 -05:00 |
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Kelly Vincent
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7d0ff14df9
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Converted several tools to data table style of loc file handling (Bowtie, BWA, Lastz, Megablast, PerM, SRMA). Cleaned up several tool XML files, removing unnecessary None parameters.
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2010-11-08 00:10:13 -05:00 |
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Kelly Vincent
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c75adfdda5
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Adding NGS simulation tool
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2010-11-03 13:52:52 -04:00 |
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Daniel Blankenberg
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94c7417f37
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Add BFAST Mapper tool and wrapper.
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2010-08-18 16:52:06 -04:00 |
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James Taylor
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4fa4d17c88
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Update tool data table config file
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2010-07-08 15:21:38 -04:00 |
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James Taylor
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c664344f11
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Two missing files from previous commit (tool data tables)
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2010-07-08 15:01:19 -04:00 |
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