Jeremy Goecks
e45a787716
Trackster fixes: (a) render bases/colors in Firefox; (b) make deletions black to avoid color conflicts with colored bases; (c) use group name for composite track. Modal fix: set maximum body height so that it does not overflow the bottom of the page. Pack scripts.
2013-03-20 10:55:24 -04:00
Aysam Guerler
3dd22cf745
Fixed: No confirm on delete permanently (footer button), saved histories
2013-03-15 14:32:30 -04:00
Carl Eberhard
2aefbcdcd3
history panel: remove display, edit, and delete buttons from hdas in the new state; pack scripts
2013-03-12 16:14:37 -04:00
Carl Eberhard
ac34fddc56
history panel and api: if hda.peek is 'no peek' do not send peek through api and do not render peek in expanded hda
2013-03-06 10:02:24 -05:00
Jeremy Goecks
e84d447d07
Trackster: (a) handle corner case when feature starts at tile boundary and (b) remove poor tile index usage. Pack script.
2013-03-01 16:18:23 -05:00
Jeremy Goecks
5be04ef7b9
Trackster: standardize start and end of regions to fall between bases.
2013-02-28 22:54:11 -05:00
Jeremy Goecks
15ca057151
Pack scripts.
2013-02-28 16:55:33 -05:00
Jeremy Goecks
6ebb660cba
Trackster: prevent data requests for very small regions by using a (configurable) minimum region size. This improves performance when zoomed in on small regions. Pack scripts.
2013-02-19 10:16:21 -05:00
Jeremy Goecks
283cb406f9
Move grid element initialization to main body to prevent it from happening too early. Pack scripts.
2013-02-17 14:59:02 -05:00
Jeremy Goecks
e3843d0279
Use 0-based coordinates for BBI data and display.
2013-02-14 18:56:27 -05:00
Jeremy Goecks
53352f18b0
Grid framework fixes, including extension of sanitize_text to work with lists of text.
2013-02-14 13:48:52 -05:00
Carl Eberhard
12dbbbf805
Fix to trackster/util.js exports; Fix to docstring in history_contents; Fix alert text in hda-model
2013-02-12 14:26:30 -05:00
Jeremy Goecks
a52ae86a3f
Pack scripts.
2013-02-12 12:01:37 -05:00
Jeremy Goecks
e4ff2da11b
Refactor tabular chunked display into Backbone and use for displaying tabular data.
2013-02-04 12:37:32 -05:00
Carl Eberhard
9d6d64684b
history panel: ensure deleted or purged datasets are considered ready to the updater; pack scripts
2013-02-04 12:14:23 -05:00
James Taylor
260228e8b1
Add some missing files
2013-02-03 23:22:16 -05:00
James Taylor
56a81d0134
Support for using Sentry for error logging. If sentry_dsn is set in
...
universe_wsgi.ini, then:
- A middleware will be installed that send thrown exceptions to sentry
- All logging messages of level WARN and above will be sent to sentry
- All pages extending base/base_panels will have javascript errors
captured and sent to sentry
2013-02-02 17:56:55 -05:00
Jeremy Goecks
517fb61e20
Fixes for 149f0fc and pack scripts.
2013-01-30 10:54:15 -05:00
Carl Eberhard
ba73ae7c33
history panel: log responseText of history-model update errors; pack scripts
2013-01-28 16:22:47 -05:00
Jeremy Goecks
409ba63a4f
Grid framework refactoring to increase speed and ease of debugging: (1) create and use Backbone object for grid; (2) move grid javascript to its own file; (3) remove webapp parameter; (4) augment search box style so that search button does not wrap. Pack scripts.
2013-01-28 14:02:25 -05:00
Daniel Blankenberg
979c1a6a16
Pack scripts.
2013-01-07 11:45:30 -05:00
Carl Eberhard
fc4ca70d27
history panel: panel was not showing deleted datasets when a dataset was purged (even when set to 'include deleted datasets') - fix by using purge_async; history panel: fix history-options menu checkbox with new font awesome class format; pack scripts
2013-01-04 10:57:18 -05:00
Carl Eberhard
0eafc2e21a
history_contents, index & show: add force_history_refresh key/value; history panel: fix broken addHdas when used via the updater, add force_history_refresh to reload the history panel when an hda/tool requests it; pack scripts
2013-01-02 16:30:24 -05:00
Carl Eberhard
52fb3b17b5
pack scripts
2012-12-20 12:35:09 -05:00
Carl Eberhard
eec1010689
history_panel: do not re-render panel when an hda is deleted
2012-12-19 17:08:21 -05:00
Carl Eberhard
a869f9a348
pack scripts
2012-12-19 15:49:03 -05:00
Carl Eberhard
b15c727274
merge staging:140b1d164818 to central
2012-12-18 15:02:46 -05:00
Carl Eberhard
f91a65baa6
pack scripts
2012-12-18 14:51:26 -05:00
Jeremy Goecks
435079f6cd
Use slideUp rather than hide for pretty hiding of HDAs when removed.
2012-12-18 12:02:56 -05:00
Jeremy Goecks
f55edeb9f5
Implement asynchronous deletion for HDAs. Pack scripts.
2012-12-18 10:40:43 -05:00
Carl Eberhard
9664fa077a
pack_scripts
2012-12-07 14:36:44 -05:00
Carl Eberhard
7a409d6ef0
clean up; pack
2012-12-07 14:00:51 -05:00
Carl Eberhard
b52e6d4113
ui: adding PopupMenu view as alternate to make_popup_menu and allow changing option text, adding/removing options, and adding checkmarks for togglable options; index.mako: use PopupMenu for history-options-button; history panel: use alternate_history.mako to add 'collapse all', 'Include hidden datasets'(toggle), 'Include deleted datasets'(toggle) to history-options-button; alternate_history.mako: include better system for debugging js when changing source directly is problematic (main/test); pack_scripts;
2012-12-07 13:56:53 -05:00
Carl Eberhard
7d79c06925
history panel: fix to trackster links when dbkey is empty; pack_scripts
2012-12-06 17:34:18 -05:00
Carl Eberhard
feddd2bf9f
history panel: fix download popup for uploaded files with meta files (bam) by moving url rendering from initialize to render; pack scripts
2012-12-06 16:33:18 -05:00
Carl Eberhard
50bf56a5d4
history panel: comment out console statements; controllers/visualization: remove non-2.5 compliant 'with' statement
2012-11-29 17:43:15 -05:00
Carl Eberhard
58ee5ce033
LazyDataLoader.js: now handles NaN/Infinity/-Infinity as null, allows overriding jQuery's datatype converters; controllers/root: added echo_json for debugging/testing
2012-11-29 13:32:44 -05:00
Carl Eberhard
14d09d9dec
scatterplot: add header discovery from first dataset line; fix animation; better hover info; fix column selection; pack scripts
2012-11-28 10:45:01 -05:00
Carl Eberhard
0a65b4947a
scatterplot: renaming/re-organization pass; layout change to vertical tabs and inclusion of chart under tabs; pack scripts
2012-11-27 11:19:32 -05:00
Carl Eberhard
96a72cda1c
history panel: moved refresh into 'History' header bar. Moved 'Collapse Expanded Datasets', 'Show/Hide Deleted Datasets', and 'Show/Hide Hidden Datasets' into 'History' gear menu. Removed gear menu from current history. Packed scripts.
2012-11-21 13:28:33 -05:00
Carl Eberhard
d48bbd4b45
pack scripts
2012-11-20 15:32:40 -05:00
Carl Eberhard
ce007f07f7
history panel: noop on ajax error fetching history updates when interrupted by iframe refresh.
2012-11-19 12:18:10 -05:00
Dannon Baker
a270da52fe
Packed scripts.
2012-11-16 09:42:05 -05:00
Carl Eberhard
cf01e9ef7b
history panel: fix to packed template name
2012-11-15 13:43:54 -05:00
Carl Eberhard
6c86d20d5c
pack scripts
2012-11-15 13:11:56 -05:00
Carl Eberhard
0f78b5ccb6
pack scripts
2012-11-15 12:04:17 -05:00
Carl Eberhard
8d1cab3775
pack scripts
2012-11-15 11:25:58 -05:00
Carl Eberhard
9d95495bde
(alt)history: subclass on for_editing flag: now hda-edit.js, hda-base.js; split hda and history templates; compile_templates.py: don't stop removal loop for error on single file; pack_scripts;
2012-11-09 15:38:51 -05:00
Carl Eberhard
f0cdf264bc
(alt)history: standardize custom broadcasted events, localize all strings; base-mvc, GalaxyLocalization: add (commented-out) code to store non-localized strings that are attempting to be localized; pack scripts;
2012-11-09 11:01:48 -05:00
Carl Eberhard
b06a75beee
pack scripts
2012-11-08 16:15:03 -05:00
Jeremy Goecks