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Commit Graph
914 Commits
Author SHA1 Message Date
Eric Rasche 508fdb9d2b Merge pull request #3330 from bgruening/hicbrowser 
HiCBrowser as Galaxy IE
 2017-09-08 14:18:18 +02:00
Max Schaefer 43ddd47320 Add missing var declarations. 
In all these cases, a variable was not declared to be a local using `var` (and hence was implicitly interpreted as a global variable), but all uses of that variable were preceded by a definition within the same function, suggesting that the variable was, in fact, meant to be local, not global.
 2017-08-16 15:22:42 +01:00
anuprulez 27e7da9406 Fix bug: 4247 in search overlay 2017-07-27 16:14:54 +02:00
Caleb b2bb88a41d remove extraneous js files 2017-07-17 12:29:07 -05:00
Caleb 2d13f9b843 downgrade to unipept-visualizations.es5.js for compatibility with older browsers 2017-07-14 13:06:53 -05:00
Caleb Easterly 9445acaa6e fix jj's link 2017-07-13 10:07:24 -05:00
Caleb c39a82f76c remove license 2017-07-13 10:02:31 -05:00
Caleb 2fbf9afc64 fix treemap being too wide 2017-07-13 08:27:44 -05:00
Caleb 2a49f1f62a add unipept triple visualization 2017-07-12 17:32:48 -05:00
anuprulez efc877ab29 Adding showBootstrap feature for Phylocanvas viz 2017-07-05 18:44:38 +02:00
pvanheus 00928743bf Correct name of neo4j datatype class 
Its neo4j.Neo4jDB: https://github.com/galaxyproject/galaxy/blob/dev/lib/galaxy/datatypes/neo4j.py#L89
 2017-06-23 23:25:09 +02:00
John Chilton 27e843bfc1 Merge pull request #4213 from bgruening/improve_search_plugin 
Improve search plugin
 2017-06-22 15:49:00 -04:00
Martin Cech 9cec283b5a make the overlay icon toggleable, change wording 2017-06-22 11:28:32 -04:00
Thoba Lose 009f44c25f using sanbi-sa image. 2017-06-22 15:00:03 +02:00
Thoba Lose 3461b26540 Merge branch 'dev' of github.com:galaxyproject/galaxy into neo4j-ie 2017-06-21 21:19:37 +02:00
anuprulez 19231b73f3 Reduce opening of search overlay to one step - just click on the magnifier 2017-06-20 19:33:49 +02:00
Dannon Baker d779622138 Merge with current dev. 2017-06-14 10:40:02 -04:00
Thoba Lose 842d14a0e6 Upgrade IE to Neo4j:3.1 2017-06-13 14:48:42 +02:00
Dannon Baker ae76200b08 Merge remote-tracking branch 'upstream/release_17.05' into dev 2017-06-06 15:52:49 -04:00
Martin Cech 0b1eaf3269 fix - remove extra slash 2017-06-06 14:27:42 -04:00
Evgeny Anatskiy 96d03c7c35 pass tool version along with the id 2017-05-18 19:31:08 +02:00
Martin Cech 5eadd4842d Merge branch 'release_17.05' into dev 2017-05-16 15:55:16 -04:00
Eric Rasche 5e880815ad Use galaxy.root by default 2017-05-14 16:02:09 +00:00
Dannon Baker 197e90c662 Replace second line (was the jpg) in upload to demonstrate multiple upload. 2017-05-12 10:56:06 -04:00
Dannon Baker c789c53f0c Fix minor typo in history tour 2017-05-12 10:08:33 -04:00
Dannon Baker a2fd8ac035 Remove GalaxyLogo upload from history intro tour 2017-05-12 10:06:40 -04:00
Martin Cech ef0809c2eb remove unnecessary whitespace fixes 
from otherwise untouched files
 2017-05-05 16:14:35 -04:00
Dannon Baker c42941da04 Remove global Toastr addition, allow external requires through standard js-app entrypoint. 2017-05-05 12:08:01 -04:00
Nate Coraor 4b3a361a88 Update Jupyter image to 17.05 2017-05-02 12:07:10 -04:00
Evgeny Anatskiy ce017c3fec upload conditional test datasets 2017-05-01 21:04:48 +02:00
John Chilton 6201c61d72 Add a note about use_volumes to Jupyter and RStudio GIEs. 2017-05-01 12:38:05 -04:00
John Chilton 9bc24aeef0 Update rstudio to match additional hid handling of Jupyter. 
Ping @erasche - does this work? I'm not sure how rstudio handles the existing DATASET_HID.
 2017-04-28 12:14:45 -04:00
John Chilton 5a6e53f728 Rework Jupyter IE for additional_ids handling. 
- Add a new option ``use_volumes`` to the Docker config.
- If using volumes, do nothing differently.
- If not using volumes, set ADDITIONAL_IDS in the environment for the IE itself to fetch (requires https://github.com/bgruening/docker-jupyter-notebook/pull/17).
 2017-04-28 12:11:10 -04:00
Evgeny Anatskiy 542e396ddf introduce two new entry points: onload and tool-menu 2017-04-26 22:02:46 +02:00
Evgeny Anatskiy 47a5f17089 many improvements 
- show warning messages (not errors)
- upload test datasets with a correct type according to the tool's .xml file (no 'auto' detection)
- add more checks to improve the overall stability
- fix tour messages
- other bugfixes
 2017-04-26 20:49:46 +02:00
Evgeny Anatskiy ed4fa0425e fix a bug when a tour coudn't be ended after executing a tool 2017-04-26 17:30:27 +02:00
Eric Rasche 60a05c1811 more touch-ups and easier vimdiffing with jupyter configs 2017-04-25 21:59:30 +00:00
Evgeny Anatskiy 17bb071721 improve and simplify the main script 2017-04-25 23:30:27 +02:00
Evgeny Anatskiy 65a31e0e5d improve conditional input type message 2017-04-25 23:30:15 +02:00
Evgeny Anatskiy d253d7aa46 add support for the 'conditional' input type 2017-04-25 23:30:15 +02:00
Evgeny Anatskiy e64cff4647 improve the generator + bugfixes 2017-04-25 23:30:15 +02:00
Evgeny Anatskiy d6109ee1e8 bugfixes and small improvements 2017-04-25 23:30:00 +02:00
Evgeny Anatskiy 31277edc61 bugfixes after the previous merge 2017-04-25 23:29:49 +02:00
Evgeny Anatskiy 5227e7b632 improve frontend script + bugfixes 2017-04-25 23:29:37 +02:00
Evgeny Anatskiy e9accf5459 deal with different input types + bugfixes 2017-04-25 23:29:24 +02:00
Evgeny Anatskiy bb2c467c37 generate tool tours 2017-04-25 23:29:24 +02:00
Evgeny Anatskiy 68ab3cfcac upload tool's test data into the History panel 2017-04-25 23:28:56 +02:00
Eric Rasche b1c6d3363d remove old versions 2017-04-25 21:13:33 +00:00
Eric Rasche 80324d08a5 17.01 version of rstudio 2017-04-25 21:05:51 +00:00
Nicola Soranzo feb31685f6 Do not click on the section name, it is already expanded 
Introduced in commit ca36c0dbfd .
 2017-04-25 15:25:22 +01:00